CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g24030

Gene name SLAH3 (SLAC1 HOMOLOGUE 3)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At5g24030 832468 SLAH3 (SLAC1 HOMOLOGUE 3) Encodes a protein with ten predicted transmembrane helices. The SLAH3 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. Although it is not expressed in guard cells, it can complement an slac1-2 mutant suggesting that it performs a similar function. SLAH3:GFP localizes to the plasma membrane. S.X. H.G.
0.33 38.1 At1g72790 843610 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus, plasma membrane;MPFOBVA S.X. H.G.
0.25 22.6 At4g18010 827526 AT5PTASE2 (MYO-INOSITOL POLYPHOSPHATE 5-PHOSPHATASE 2) Encodes an inositol polyphosphate 5-phosphatase that appears to have Type I activity. It can dephosphorylate IP3(inositol(1,4,5)P3) and IP4 (inositol(1,3,4,5)P4), but it does not appear to be active against phosphatidylinositol 4,5 bisphosphate. Overexpression of this gene renders plants insensitive to ABA in germination and growth assays. S.X. H.G.
0.20 14.4 At1g35350 840424 - F:unknown;P:unknown;C:integral to membrane;FMPOB S.X. H.G.
0.17 10.2 At2g31010 817652 protein kinase family protein F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
188.3 100.0 E-MEXP-98-raw-cel-320188804
178.6 100.0 E-MEXP-98-raw-cel-320189024
147.3 99.9 E-MEXP-98-raw-cel-320188859
122.3 99.9 E-MEXP-98-raw-cel-320189079
94.7 99.9 GSM216896 ga1-3_shoots_1h_water_repl4 GSE8739 Early gibberellin responses in Arabidopsis
76.8 99.9 GSM216906 ga1-3_shoots_1h_GA4_repl4 GSE8739 Early gibberellin responses in Arabidopsis
73.3 99.9 GSM216895 ga1-3_shoots_1h_water_repl3 GSE8739 Early gibberellin responses in Arabidopsis
70.6 99.9 GSM216904 ga1-3_shoots_1h_GA4_repl3 GSE8739 Early gibberellin responses in Arabidopsis
63.7 99.8 GSM142613 DV001_ATH1_A8-degra-Egh GSE6150 Gibberellin and ethylene cross-talk at the level of transcriptional regulation in Arabidopsis.
54.5 99.8 GSM204026 protoplast_control_rep1 GSE8248 Identification of hypoxia-inducible genes in Arabidopsis mesophyll cells
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.14 1e-9 65 At4g27970 828910 SLAH2 (SLAC1 HOMOLOGUE 2) Encodes a protein with ten predicted transmembrane helices. The SLAH2 protein has similarity to the SLAC1 protein involved in ion homeostasis in guard cells. But, it is not expressed in guard cells and cannot complement a slac1-2 mutant suggesting that it performs a different function. SLAH2:GFP localizes to the plasma membrane. C.G. S.X.
0.01 2e-1 38 At5g06730 830562 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plasma membrane;PFOBM C.G. S.X.
0.01 9e-1 36 At5g41080 834110 glycerophosphoryl diester phosphodiesterase family protein F:phosphoric diester hydrolase activity, glycerophosphodiester phosphodiesterase activity;P:glycerol metabolic process, lipid metabolic process;C:unknown;BOMFPAV C.G. S.X.
0.01 9e-1 36 At1g21810 838784 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.01 4e+0 34 At5g23000 832364 MYB37 (MYB DOMAIN PROTEIN 37) "Putative homolog of the Blind gene in tomato. Together with RAX2 and RAX3 belong to the class R2R3 MYB genes; encoded by the Myb-like transcription factor MYB37, regulates axillary meristem formation. RAX1 is expressed in a small central domain within the boundary zone separating SAM and leaf primordia during early leaf primordium development and is currently the earliest spatial marker for future axillary meristems. Member of the R2R3 factor gene family." C.G. S.X.
0.01 4e+0 34 At5g20810 832204 auxin-responsive protein, putative / small auxin up RNA (SAUR_B) F:calmodulin binding;P:response to auxin stimulus;C:peroxisome;PO C.G. S.X.
0.02 4e+0 34 At5g10160 830880 beta-hydroxyacyl-ACP dehydratase, putative F:hydro-lyase activity, 3-hydroxyacyl-[acyl-carrier-protein] dehydratase activity;P:fatty acid biosynthetic process;C:cell wall, chloroplast, membrane;BOPM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 1e-6 56 Glycine max Gma.17671.1.S1_at CA820135 - - 3e-7 At5g24030 SLAH3 (SLAC1 HOMOLOGUE 3) C.G. S.X.
0.02 7e+0 32 Hordeum vulgare Contig408_at Contig408 - - 1e+0 At1g03600 photosystem II family protein C.G. S.X.
0.13 5e-4 48 Oryza sativa Os05g0219900 AK120886.1 - Conserved hypothetical protein 3e-4 At5g24030 SLAH3 (SLAC1 HOMOLOGUE 3) C.G. S.X.
0.09 6e-6 54 Populus trichocarpa Ptp.3718.1.S1_at DN491471 - - 2e-6 At5g24030 SLAH3 (SLAC1 HOMOLOGUE 3) C.G. S.X.
0.07 1e-6 56 Triticum aestivum TaAffx.65288.1.A1_at BJ252359 - - 3e-7 At5g24030 SLAH3 (SLAC1 HOMOLOGUE 3) C.G. S.X.
0.01 3e-1 36 Vitis vinifera 1613294_at CD005027 - - 1e+0 At2g29180 unknown protein C.G. S.X.
0.06 2e-3 44 Zea mays Zm.18455.1.A1_at CO531054 C4-dicarboxylate transporter/malic acid transport protein - 2e-3 At5g24030 SLAH3 (SLAC1 HOMOLOGUE 3) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006873 Any process involved in the maintenance of an internal equilibrium of ions at the level of a cell.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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