CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g23940

Gene name EMB3009 (embryo defective 3009)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.34 39.8 At5g23940 832459 EMB3009 (embryo defective 3009) F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:embryonic development ending in seed dormancy;C:cellular_component unknown;PFBO S.X. H.G.
0.96 97.3 At1g12570 837814 glucose-methanol-choline (GMC) oxidoreductase family protein F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVA S.X. H.G.
0.96 97.3 At2g42990 818901 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM S.X. H.G.
0.96 97.3 At3g10570 820222 CYP77A6 member of CYP77A S.X. H.G.
0.96 97.3 At5g55720 835666 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO S.X. H.G.
0.92 96.0 At1g63710 842675 CYP86A7 Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at highest level in mature stems and flowers. S.X. H.G.
0.92 96.0 At2g04570 814999 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM S.X. H.G.
0.92 96.0 At5g33370 833315 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM S.X. H.G.
0.92 96.0 At5g45960 834636 GDSL-motif lipase/hydrolase family protein F:lipase activity, hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM S.X. H.G.
0.89 94.6 At1g01600 839347 CYP86A4 Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly at highest level in mature stems and flowers. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
96.8 99.9 GSM131589 ATGE_35_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
95.0 99.9 GSM131590 ATGE_35_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
88.3 99.9 GSM131588 ATGE_35_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
64.7 99.8 GSM232882 Mut.3-2.90 GSE9201 Identification of genes responding to the activity of the Arabidopsis cytochrome P450 KLUH/CYP78A5
50.3 99.8 GSM131632 ATGE_58_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
42.4 99.8 GSM131631 ATGE_58_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
40.9 99.8 GSM232881 Mut.1-5.90 GSE9201 Identification of genes responding to the activity of the Arabidopsis cytochrome P450 KLUH/CYP78A5
35.8 99.7 GSM232883 Mut.1-5.240 GSE9201 Identification of genes responding to the activity of the Arabidopsis cytochrome P450 KLUH/CYP78A5
34.5 99.7 GSM131630 ATGE_58_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
30.8 99.7 GSM232890 Wt.4-3.0 GSE9201 Identification of genes responding to the activity of the Arabidopsis cytochrome P450 KLUH/CYP78A5
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 3e-3 44 At5g62390 836360 ATBAG7 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 7) A member of Arabidopsis BAG (Bcl-2-associated athanogene) proteins, plant homologs of mammalian regulators of apoptosis. Plant BAG proteins are multi-functional and remarkably similar to their animal counterparts, as they regulate apoptotic-like processes ranging from pathogen attack, to abiotic stress, to plant development. C.G. S.X.
0.01 3e-3 44 At4g00830 827998 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFPBVA C.G. S.X.
0.01 5e-2 40 At5g63550 836474 - F:unknown;P:unknown;C:unknown;MOFBPVA C.G. S.X.
0.02 5e-2 40 At4g08910 826469 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 5e-2 40 At2g26000 817141 zinc finger (C3HC4-type RING finger) family protein F:protein binding, catalytic activity, zinc ion binding;P:unknown;C:chloroplast;MPOFB C.G. S.X.
0.01 2e-1 38 At5g20660 832189 24 kDa vacuolar protein, putative F:peptidase activity;P:proteolysis;C:unknown;MBFOPA C.G. S.X.
0.01 2e-1 38 At5g65683 836695 zinc finger (C3HC4-type RING finger) family protein F:ubiquitin-protein ligase activity, protein binding, zinc ion binding;P:biological_process unknown;C:cellular_component unknown;OMPFBA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 2e-17 91 Glycine max Gma.1758.1.S1_at CD402046 - - 1e-17 At5g23940 EMB3009 (embryo defective 3009) C.G. S.X.
0.03 4e-1 36 Hordeum vulgare Contig13307_at Contig13307 - - 5e-1 At5g23940 EMB3009 (embryo defective 3009) C.G. S.X.
0.02 9e-2 40 Oryza sativa Os06g0657901 NM_193102.1 - - 2e-1 At5g11930 glutaredoxin family protein C.G. S.X.
0.06 3e-7 57 Populus trichocarpa PtpAffx.7311.1.S1_at CK091290 hypothetical protein - 2e-7 At5g23940 EMB3009 (embryo defective 3009) C.G. S.X.
0.02 8e-1 36 Triticum aestivum Ta.12899.1.A1_at CD491329 - - 1e-3 At3g50550 unknown protein C.G. S.X.
0.05 2e-13 75 Vitis vinifera 1611086_at CF415431 hypothetical protein LOC100249245 - 3e-13 At5g23940 EMB3009 (embryo defective 3009) C.G. S.X.
0.02 3e-1 36 Zea mays Zm.2055.2.S1_at CK826991 - - 2e-2 At4g00830 RNA recognition motif (RRM)-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010090 The process by which the structures of a hair cell (trichome) cell are generated and organized. This process occurs while the initially relatively unspecialized epidermal cell is acquiring the specialized features of a hair cell. An example of this process is found in Arabidopsis thaliana.
N GO:0009793 The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00355 Acyltransferase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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