CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g23880

Gene name CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.74 86.1 At5g23880 832453 CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) Encodes a protein similar to the 100kD subunit of cleavage and polyadenylation specificity factor (CPSF), the factor responsible for the recognition of the AAUAAA motif during mRNA polyadenylation. The protein interacts with a portion of a nuclear poly(A) polymerase. It is likely to be a part of the mRNA 3'end formation apparatus. S.X. H.G.
0.55 70.6 At5g51120 835186 PABN1 (POLYADENYLATE-BINDING PROTEIN 1) Encodes a homolog of the protein PABN1, a polyadenylation factor subunit. S.X. H.G.
0.50 65.3 At1g04510 839503 transducin family protein / WD-40 repeat family protein F:ubiquitin-protein ligase activity, nucleotide binding;P:response to cadmium ion;C:nucleolus, CUL4 RING ubiquitin ligase complex;MFOBPA S.X. H.G.
0.48 62.5 At4g10320 826624 isoleucyl-tRNA synthetase, putative / isoleucine--tRNA ligase, putative F:isoleucine-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, ATP binding;P:response to cadmium ion, tRNA aminoacylation for protein translation;C:cytosol;OBAMFP S.X. H.G.
0.48 62.5 At4g26870 828794 aspartyl-tRNA synthetase, putative / aspartate--tRNA ligase, putative F:aspartate-tRNA ligase activity, nucleotide binding, aminoacyl-tRNA ligase activity, nucleic acid binding, ATP binding;P:response to cadmium ion, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAP S.X. H.G.
0.46 59.8 At5g20890 832213 chaperonin, putative F:unfolded protein binding, protein binding, ATP binding;P:protein folding, cellular protein metabolic process;C:anchored to plasma membrane, cell wall;BOMFPA S.X. H.G.
0.46 59.8 At3g02530 821160 chaperonin, putative F:unfolded protein binding, protein binding, ATP binding;P:response to cadmium ion;C:membrane, cytoplasm;BOMFPA S.X. H.G.
0.45 58.3 At1g34130 840312 STT3B (staurosporin and temperature sensitive 3-like b) Encodes homolog of yeast STT3, a subunit of oligosaccharyltransferase. S.X. H.G.
0.45 58.3 At5g26830 832741 threonyl-tRNA synthetase / threonine--tRNA ligase (THRRS) Encodes a dual-targeted threonyl-tRNA synthetase found in both the chloroplast and mitochondrion. S.X. H.G.
0.44 57.2 At4g11790 826785 Ran-binding protein 1 domain-containing protein / RanBP1 domain-containing protein F:molecular_function unknown;P:intracellular transport;C:cellular_component unknown;OMBFPVA S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
22.1 99.6 GSM133959 Fukuda_1-4_2B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
20.4 99.6 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.1 99.6 GSM133765 Lindsey_1-17_torpedo-cotyledon_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
18.0 99.5 GSM133966 Fukuda_1-11_10A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
18.0 99.5 GSM133967 Fukuda_1-12_10B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
17.3 99.5 GSM133958 Fukuda_1-3_2A_Rep1_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
17.0 99.5 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.8 99.5 GSM133961 Fukuda_1-6_4B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
15.7 99.5 GSM133974 Birnbaum_1-4_StageI-1_Rep1_ATH1 GSE5749 A gene expression map of the Arabidopsis root
14.9 99.4 GSM133965 Fukuda_1-10_8B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 7e-2 40 At2g37960 818373 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;BOFMP C.G. S.X.
0.01 1e+0 36 At4g34100 829556 protein binding / zinc ion binding F:protein binding, zinc ion binding;P:unknown;C:chloroplast;MPOFV C.G. S.X.
0.01 1e+0 36 At4g26300 828736 emb1027 (embryo defective 1027) F:nucleotide binding, aminoacyl-tRNA ligase activity, arginine-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, arginyl-tRNA aminoacylation;C:mitochondrion, chloroplast;OBMAFPV C.G. S.X.
0.01 1e+0 36 At4g35380 829691 guanine nucleotide exchange family protein F:binding, ARF guanyl-nucleotide exchange factor activity, guanyl-nucleotide exchange factor activity;P:regulation of ARF protein signal transduction;C:intracellular;MFOPBA C.G. S.X.
0.01 1e+0 36 At3g28630 822493 - F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PM C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.07 5e-22 107 Glycine max GmaAffx.24635.1.A1_at CD418601 - - 9e-23 At5g23880 CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) C.G. S.X.
0.05 1e-14 81 Hordeum vulgare Contig16128_at Contig16128 - - 7e-15 At5g23880 CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) C.G. S.X.
0.19 1e-20 103 Oryza sativa Os09g0569400 AK063384.1 - RNA-metabolising metallo-beta-lactamase domaincontaining protein 7e-21 At5g23880 CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) C.G. S.X.
0.22 1e-19 99 Populus trichocarpa PtpAffx.103932.1.S1_at CX175756 - - 5e-20 At5g23880 CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) C.G. S.X.
0.04 5e-9 63 Triticum aestivum Ta.12414.1.S1_at BQ172285 - - 2e-9 At5g23880 CPSF100 (CLEAVAGE AND POLYADENYLATION SPECIFICITY FACTOR 100) C.G. S.X.
0.01 1e+0 34 Vitis vinifera 1617120_s_at CF208320 hypothetical protein LOC100265095 - 1e+0 At4g18593 dual specificity protein phosphatase-related C.G. S.X.
0.01 2e+0 34 Zea mays Zm.1231.2.S1_a_at BG841390 - - 1e+0 At4g24350 phosphorylase family protein C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0035194 Any process of posttranscriptional gene inactivation (silencing) mediated by small RNA molecules that may trigger mRNA degradation or negatively regulate translation.
C GO:0006379 Any process by which a pre-mRNA or mRNA molecule is cleaved at specific sites or in a regulated manner.
C GO:0006378 The enzymatic addition of a sequence of 40-200 adenylyl residues at the 3' end of a eukaryotic mRNA primary transcript.
N GO:0009793 The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage