CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g23840

Gene name MD-2-related lipid recognition domain-containing protein / ML domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.74 86.1 At5g23840 832449 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.80 89.8 At5g42600 834267 MRN1 (MARNERAL SYNTHASE) Encodes an oxidosqualene synthase that produces the monocyclic triterpene marneral. S.X. H.G.
0.78 88.6 At5g42580 834265 CYP705A12 a member of the cytochrome P450 family S.X. H.G.
0.70 83.5 At5g42590 834266 CYP71A16 putative cytochrome P450 S.X. H.G.
0.64 78.9 At5g48010 834852 THAS1 (THALIANOL SYNTHASE 1) Encodes an oxidosqualene cyclase involved in the biosynthesis of thalianol, a tricyclic triterpenoid of unknown function. Overexpression of THAS leads to dwarfing in the aerial tissues of Arabidopsis plants, but increases their root length. THAS is part of a small operon-like cluster of genes (with At5g48000 (THAH) and At5g47990 (THAD)) involved in thalianol metabolism. S.X. H.G.
0.63 78.1 At5g48000 834851 CYP708A2 Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation. S.X. H.G.
0.61 76.7 At1g14960 838061 major latex protein-related / MLP-related F:molecular_function unknown;P:response to biotic stimulus, defense response;C:cellular_component unknown;P S.X. H.G.
0.61 76.7 At3g29250 822580 copper ion binding / oxidoreductase F:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAV S.X. H.G.
0.60 75.7 At5g47990 834850 CYP705A5 encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings. S.X. H.G.
0.57 73.8 At5g47980 834849 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity, acyltransferase activity;P:unknown;C:cellular_component unknown;PFB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
250.1 100.0 GSM231198 wild-type at T0.5, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
242.7 100.0 GSM231204 chl1 at T0.5, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
224.5 100.0 GSM231201 chl1 at T0, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
217.6 100.0 GSM231195 wild-type at T0, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
120.2 99.9 GSM231196 wild-type at T0.5, biological rep1 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
105.8 99.9 GSM231202 chl1 at T0.5, biological rep1 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
104.8 99.9 GSM231193 wild-type at T0, biological rep1 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
103.0 99.9 GSM142752 MJ001_ATH1_A3-jones-rh1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
95.8 99.9 GSM231199 chl1 at T0, biological rep1 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
89.9 99.9 GSM231200 chl1 at T0, biological rep2 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.83 8e-128 456 At5g23820 832447 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:vacuole;P C.G. S.X.
0.78 3e-84 311 At5g23830 832448 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.02 2e-2 40 At1g09795 837509 ATATP-PRT2 (ATP PHOSPHORIBOSYL TRANSFERASE 2) ATP phosphoribosyl transferase, catalyses first step of histidine biosynthesis C.G. S.X.
0.02 6e-2 38 At1g51900 841617 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;OMBFPVA C.G. S.X.
0.01 2e-1 36 At5g61140 836235 DEAD box RNA helicase, putative Encodes a predicted protein with 30% identity with MER3/RCK. C.G. S.X.
0.03 2e-1 36 At5g24560 832527 AtPP2-B12 (Phloem protein 2-B12) F:carbohydrate binding;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e-1 36 At1g67930 843121 Golgi transport complex protein-related F:unknown;P:unknown;C:chloroplast;OMFBPV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Glycine max Gma.1624.1.A1_s_at BE658903 - - 7e-1 At5g23840 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein C.G. S.X.
0.03 2e+0 32 Hordeum vulgare Contig2399_at Contig2399 - - 6e-5 At2g04700 ferredoxin thioredoxin reductase catalytic beta chain family protein C.G. S.X.
0.04 2e+0 34 Oryza sativa OsAffx.6424.1.S1_at - - - 0 C.G. S.X.
0.04 3e-1 36 Populus trichocarpa PtpAffx.220554.1.S1_at pmrna36958 hypothetical protein - 3e-1 At5g23840 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein C.G. S.X.
0.03 4e+0 32 Triticum aestivum TaAffx.121238.1.A1_at BG906992 - - 3e+0 At5g23840 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein C.G. S.X.
0.04 1e-3 42 Vitis vinifera 1606643_at CF201121.1 - - 9e-8 At5g51020 CRL (CRUMPLED LEAF) C.G. S.X.
0.02 2e+0 32 Zea mays Zm.7698.1.A1_at BM079553 hypothetical protein LOC100216658 - 7e+0 At5g23840 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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