CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g23830

Gene name MD-2-related lipid recognition domain-containing protein / ML domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.38 46.7 At5g23830 832448 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.88 94.0 At3g29250 822580 copper ion binding / oxidoreductase F:oxidoreductase activity, copper ion binding;P:metabolic process;C:cellular_component unknown;BOFMPAV S.X. H.G.
0.78 88.6 At5g42590 834266 CYP71A16 putative cytochrome P450 S.X. H.G.
0.75 86.9 At1g66800 842998 cinnamyl-alcohol dehydrogenase family / CAD family similar to Eucalyptus gunnii alcohol dehydrogenase of unknown physiological function (GI:1143445), apple tree, PIR:T16995; NOT a cinnamyl-alcohol dehydrogenase S.X. H.G.
0.73 85.5 At5g23840 832449 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.67 81.6 At4g12550 826868 AIR1 isolated from differential screening of a cDNA library from auxin-treated root culture. encodes a protein that is related to a large family of proteins that consist of a proline-rich or glycine-rich N-terminus and a hydrophobic, possibly membrane spanning C-terminus. S.X. H.G.
0.50 65.3 At3g22570 821829 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P S.X. H.G.
0.48 62.5 At5g48000 834851 CYP708A2 Encodes a member of the CYP708A family of cytochrome P450 enzymes. THAH appears to add a hydroxyl group to the triterpene thalianol. thah1 mutants have an elevated accumulation of thalianol. thah1-1 mutants have longer roots than wild type plants. Thalian-diol and desaturated thalian-diol are lost from the root extracts of thah1-1 mutants. Overexpression of the sequence from At5g48000.1 rescues the thah1-1 mutant phenotype (Field 2008); it is unknown whether the shorter sequences associated with other gene models would provide functional complementation. S.X. H.G.
0.47 61.2 At5g47990 834850 CYP705A5 encodes a member of the CYP705A family of cytochrome P450 enzymes. It appears to catalyze the addition of a double bond to thalian-diol at carbon 15. Reduced levels of THAD expression lead to a build up of thalian-diol in root extracts. thad1-1 mutants also have longer roots than wild type seedlings. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
58.3 99.8 GSM231201 chl1 at T0, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
54.2 99.8 GSM231204 chl1 at T0.5, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
52.9 99.8 GSM231195 wild-type at T0, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
47.4 99.8 GSM231202 chl1 at T0.5, biological rep1 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
44.8 99.8 GSM231198 wild-type at T0.5, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
42.8 99.8 GSM231193 wild-type at T0, biological rep1 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
42.6 99.8 GSM231194 wild-type at T0, biological rep2 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
40.3 99.8 GSM231199 chl1 at T0, biological rep1 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
40.0 99.8 GSM142752 MJ001_ATH1_A3-jones-rh1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
39.5 99.8 GSM231200 chl1 at T0, biological rep2 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.78 3e-84 311 At5g23840 832449 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.80 2e-79 295 At5g23820 832447 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:vacuole;P C.G. S.X.
0.03 2e-1 36 At5g24560 832527 AtPP2-B12 (Phloem protein 2-B12) F:carbohydrate binding;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 2e-1 36 At1g52120 841642 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO C.G. S.X.
0.01 9e-1 34 At5g44030 834426 CESA4 (CELLULOSE SYNTHASE A4) Encodes a cellulose synthase involved in secondary cell wall biosynthesis. Confers resistance towards bacterial and fungal pathogens, independent of salicylic acid, ethylene and jasmonate signaling. C.G. S.X.
0.01 9e-1 34 At1g71770 843507 PAB5 (POLY(A)-BINDING PROTEIN 5) Encodes a Class I polyA-binding protein. Expressed in floral organs. Binds polyA sepharose in vitro. C.G. S.X.
0.01 9e-1 34 At1g07550 837269 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 1e+0 34 Glycine max Gma.1624.1.A1_s_at BE658903 - - 7e-1 At5g23840 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein C.G. S.X.
0.04 7e+0 30 Hordeum vulgare HVSMEg0008M24r2_at HVSMEg0008M24r2 - - 3e-3 At5g48630 cyclin family protein C.G. S.X.
0.03 2e-3 44 Oryza sativa Os06g0660700 AK058614.1 - Ubiquitin-conjugating enzyme E2S (EC 6.3.2.19)(Ubiquitin-conjugating enzyme E2-24 kDa)(Ubiquitin-protein ligase) (Ubiquitin carrier protein)(E2-EPF5) 1e-17 At5g05080 UBC22 (ubiquitin-conjugating enzyme 22) C.G. S.X.
0.04 1e+0 34 Populus trichocarpa PtpAffx.217785.1.S1_at pmrna33188 - - 6e-11 At5g38950 germin-like protein-related C.G. S.X.
0.05 6e-2 38 Triticum aestivum Ta.11799.1.S1_at BJ236332 - - 7e-2 At5g23830 MD-2-related lipid recognition domain-containing protein / ML domain-containing protein C.G. S.X.
0.04 4e+0 30 Vitis vinifera 1622228_at CF568837 - - 4e-68 At1g52740 HTA9 (HISTONE H2A PROTEIN 9) C.G. S.X.
0.03 2e+0 32 Zea mays Zm.12431.1.S1_at AY106853.1 hypothetical protein LOC100217105 - 4e+0 At4g18400 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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