CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g23730

Gene name nucleotide binding

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At5g23730 832438 nucleotide binding F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPA S.X. H.G.
0.48 62.5 At3g17609 821027 HYH (HY5-HOMOLOG) F:transcription factor activity, DNA binding;P:response to UV-B, anthocyanin metabolic process, regulation of transcription, DNA-dependent;C:nucleus;MPFO S.X. H.G.
0.46 59.8 At5g42760 834285 - F:unknown;P:biological_process unknown;C:cellular_component unknown;BOAPMF S.X. H.G.
0.28 30.3 At5g24120 832477 SIGE (SIGMA FACTOR E) Encodes a specialized sigma factor that functions in regulation of plastid genes and is responsible for the light-dependent transcription at the psbD LRP. Activation of SIG5 is dependent upon blue light and mediated by cryptochromes. S.X. H.G.
0.25 22.6 At3g56290 824796 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P S.X. H.G.
0.20 14.4 At1g64500 842758 glutaredoxin family protein F:electron carrier activity, protein disulfide oxidoreductase activity;P:N-terminal protein myristoylation, cell redox homeostasis;C:cellular_component unknown;PMBOF S.X. H.G.
0.14 6.8 At5g52570 835334 BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) Converts β-carotene to zeaxanthin via cryptoxanthin. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
59.5 99.8 GSM131185 AtGen_D-18_2-FL_REP2_ATH1 GSE5617 AtGenExpress: Light treatments
56.8 99.8 GSM142781 AM002_ATH1_A6-MCCOR-WDB GSE6169 Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
51.7 99.8 E-MEXP-550-raw-cel-871342382
48.9 99.8 Evans_2-2_col-WT-cold_ATH1
47.5 99.8 E-MEXP-557-raw-cel-879731502
44.0 99.8 GSM142663 NE001_ATH1_A1-Evans-w20 GSE6154 Molecular basis of respiratory burst-mediated thermotolerance in Arabidopsis
43.9 99.8 GSM142666 NE001_ATH1_A4-Evans-m20 GSE6154 Molecular basis of respiratory burst-mediated thermotolerance in Arabidopsis
43.4 99.8 GSM142777 AM002_ATH1_A2-MCCOR-WDA GSE6169 Seedling transcriptome affected by a far-red light preconditioning treatment to block chloroplast development.
41.1 99.8 Evans_2-4_fab1-mut-cold_ATH1
40.2 99.8 GSM131200 AtGen_D-34_3-FL_REP3_ATH1 GSE5617 AtGenExpress: Light treatments
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.14 6e-7 56 At5g52250 835301 transducin family protein / WD-40 repeat family protein Encodes a transducin protein whose gene expression is induced by UV-B. This induction is reduced in hy5 mutant and may be a target of HY5 during UV-B response. C.G. S.X.
0.01 6e-4 46 At1g59910 842285 formin homology 2 domain-containing protein / FH2 domain-containing protein F:actin binding;P:cellular component organization, actin cytoskeleton organization;C:plasma membrane;MBOFPVA C.G. S.X.
0.02 2e-3 44 At5g23970 832462 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFB C.G. S.X.
0.02 2e-3 44 At1g18170 838396 immunophilin / FKBP-type peptidyl-prolyl cis-trans isomerase family protein F:FK506 binding, peptidyl-prolyl cis-trans isomerase activity;P:protein folding;C:chloroplast thylakoid membrane, chloroplast;BOMPF C.G. S.X.
0.02 9e-3 42 At4g01840 828091 KCO5 (CA2+ ACTIVATED OUTWARD RECTIFYING K+ CHANNEL 5) Encodes AtTPK5, a member of the Arabidopsis thaliana K+ channel family of AtTPK/KCO proteins. AtTPK5 is targeted to the vacuolar membrane. May form homomeric ion channels in vivo. C.G. S.X.
0.03 9e-3 42 At3g19580 821495 AZF2 (ARABIDOPSIS ZINC-FINGER PROTEIN 2) Encodes zinc finger protein. mRNA levels are upregulated in response to ABA, high salt, and mild dessication. The protein is localized to the nucleus and acts as a transcriptional repressor. C.G. S.X.
0.02 9e-3 42 At2g35260 818093 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
0.03 9e-3 42 At2g45050 819112 zinc finger (GATA type) family protein F:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus;FPMOV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 1e-2 42 Glycine max GmaAffx.88121.1.S1_at BU760836 - - 3e+0 At5g63760 IBR domain-containing protein C.G. S.X.
0.03 7e-2 38 Hordeum vulgare Contig19274_at Contig19274 - - 4e+0 At5g09230 SRT2 (SIRTUIN 2) C.G. S.X.
0.02 2e-2 42 Oryza sativa Os04g0529900 9632.m04301 - Hypothetical protein 2e-2 At1g52830 IAA6 (INDOLE-3-ACETIC ACID 6) C.G. S.X.
0.08 5e-2 40 Populus trichocarpa PtpAffx.213084.1.S1_at pmrna25603 hypothetical protein - 1e-3 At5g52250 transducin family protein / WD-40 repeat family protein C.G. S.X.
0.03 4e-2 40 Triticum aestivum TaAffx.107028.1.S1_at CA707386 - - 3e-1 At3g59060 PIL6 (PHYTOCHROME INTERACTING FACTOR 3-LIKE 6) C.G. S.X.
0.03 3e-3 42 Vitis vinifera 1621823_at CF214240 hypothetical protein LOC100253216 - 4e+0 At5g66000 unknown protein C.G. S.X.
0.02 4e-3 42 Zea mays Zm.8493.1.S1_at BM074400 hypothetical protein LOC100272804 - 1e-1 At1g75700 HVA22G (HVA22-LIKE PROTEIN G) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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