CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g23680

Gene name sterile alpha motif (SAM) domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.85 92.4 At5g23680 832433 sterile alpha motif (SAM) domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFV S.X. H.G.
0.84 91.9 At1g15200 838086 protein-protein interaction regulator family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
0.84 91.9 At1g15940 838164 binding F:binding;P:biological_process unknown;C:unknown;MOBFPVA S.X. H.G.
0.84 91.9 At1g65440 842855 GTB1 Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly. S.X. H.G.
0.79 89.1 At1g28420 839740 HB-1 (homeobox-1) F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOFBPVA S.X. H.G.
0.79 89.1 At3g07780 819969 OBE1 (OBERON1) Encodes a nuclear PHD finger protein that is functionally redundant with OBE2 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems. S.X. H.G.
0.72 84.8 At3g50690 824233 leucine-rich repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA S.X. H.G.
0.71 84.2 At2g40650 818660 pre-mRNA splicing factor PRP38 family protein F:binding;P:RNA processing;C:cellular_component unknown;MBOFPVA S.X. H.G.
0.70 83.5 At5g60030 836125 unknown protein F:unknown;P:unknown;C:unknown;MOFBPVA S.X. H.G.
0.67 81.6 At2g39260 818511 RNA binding / binding / protein binding F:protein binding, RNA binding, binding;P:translation, RNA metabolic process;C:cellular_component unknown;MOFBPVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
395.5 100.0 GSM284391 Arabidopsis GPE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
312.1 100.0 GSM284394 Arabidopsis GCE3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
284.6 100.0 GSM284392 Arabidopsis GCE1 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
255.8 100.0 GSM284390 Arabidopsis GPE2 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
249.0 100.0 GSM311279 Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
202.6 100.0 GSM311273 Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
197.7 100.0 GSM311288 Laser capture microdissected (LCM) embryo proper at the linear-cotyledon stage, biological replicate 2 GSE12403 Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
188.5 100.0 GSM284386 Arabidopsis GSUS3 GSE11262 Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
188.4 100.0 GSM311285 Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 1 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
178.5 100.0 GSM311274 Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 2 GSE12402 Expression data from Arabidopsis seed compartments at the pre-globular stage
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.42 4e-69 262 At3g48800 824041 sterile alpha motif (SAM) domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBO C.G. S.X.
0.02 1e-4 48 At2g39830 818570 DAR2 (DA1-RELATED PROTEIN 2) F:zinc ion binding;P:unknown;C:chloroplast;MOPFB C.G. S.X.
0.03 5e-4 46 At5g52200 835296 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPV C.G. S.X.
0.05 5e-4 46 At2g29125 817461 RTFL2 (ROTUNDIFOLIA LIKE 2) F:molecular_function unknown;P:shoot development;C:chloroplast;OMFBPVA C.G. S.X.
0.02 2e-3 44 At5g17690 831635 TFL2 (TERMINAL FLOWER 2) Regulates the meristem response to light signals and the maintenance of inflorescence meristem identity. Influences developmental processes controlled by APETALA1. TFL2 silences specific genes within euchromatin but not genes positioned in heterochromatin. TFL2 protein localized preferentially to euchromatic regions and not to heterochromatic chromocenters. Involved in euchromatin organization. Required for epigenetic maintenance of the vernalized state. C.G. S.X.
0.03 2e-3 44 At5g63650 836485 SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5) encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress. C.G. S.X.
0.02 2e-3 44 At4g21660 828253 proline-rich spliceosome-associated (PSP) family protein F:unknown;P:mRNA processing;C:nucleus, chloroplast;MOFPVBA C.G. S.X.
0.02 2e-3 44 At3g18480 821377 AtCASP (Arabidopsis thaliana CCAAT-displacement protein alternatively spliced product) This gene is predicted to encode a protein that functions as a Golgi apparatus structural component, known as a golgin in mammals and yeast. A fluorescently-tagged version of CASP co-localizes with Golgi markers, and this localization appears to require the C-terminal (565�689aa) portion of the protein. The protein is inserted into a membrane in a type II orientation. C.G. S.X.
0.03 2e-3 44 At3g28200 822446 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOB C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 3e-9 63 Glycine max GmaAffx.51870.1.A1_at AW348434 - - 5e-11 At3g48800 sterile alpha motif (SAM) domain-containing protein C.G. S.X.
0.05 1e-2 40 Hordeum vulgare EBro01_SQ001_M06_at EBro01_SQ001_M06 - - 8e-1 At5g20885 zinc finger (C3HC4-type RING finger) family protein C.G. S.X.
0.04 9e-4 46 Oryza sativa Os12g0627900 9640.m04263 - - 2e-1 At1g48990 glycine-rich protein / oleosin C.G. S.X.
0.17 7e-13 75 Populus trichocarpa PtpAffx.73737.1.S1_at DN498080 hypothetical protein - 2e-13 At5g23680 sterile alpha motif (SAM) domain-containing protein C.G. S.X.
0.05 8e-6 52 Triticum aestivum TaAffx.5357.1.S1_at CA713422 - - 5e-1 At2g23320 WRKY15 C.G. S.X.
0.14 2e-9 61 Vitis vinifera 1622740_at CF373305 hypothetical protein LOC100245808 - 4e-9 At5g23680 sterile alpha motif (SAM) domain-containing protein C.G. S.X.
0.03 5e-2 38 Zea mays ZmAffx.783.1.S1_at AI745854 - - 8e-7 At1g51730 RWD domain-containing protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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