Gene omics information

Query gene ID At5g23680
Gene name sterile alpha motif (SAM) domain-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8592.4At5g23680832433sterile alpha motif (SAM) domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVS.X.H.G.
0.8491.9At1g15200838086protein-protein interaction regulator family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAS.X.H.G.
0.8491.9At1g15940838164bindingF:binding;P:biological_process unknown;C:unknown;MOBFPVAS.X.H.G.
0.8491.9At1g65440842855GTB1Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly.S.X.H.G.
0.7989.1At1g28420839740HB-1 (homeobox-1)F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOFBPVAS.X.H.G.
0.7989.1At3g07780819969OBE1 (OBERON1)Encodes a nuclear PHD finger protein that is functionally redundant with OBE2 and plays an important role in the maintenance and/or establishment of the root and shoot apical meristems.S.X.H.G.
0.7284.8At3g50690824233leucine-rich repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAS.X.H.G.
0.7184.2At2g40650818660pre-mRNA splicing factor PRP38 family proteinF:binding;P:RNA processing;C:cellular_component unknown;MBOFPVAS.X.H.G.
0.7083.5At5g60030836125unknown proteinF:unknown;P:unknown;C:unknown;MOFBPVAS.X.H.G.
0.6781.6At2g39260818511RNA binding / binding / protein bindingF:protein binding, RNA binding, binding;P:translation, RNA metabolic process;C:cellular_component unknown;MOFBPVAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
395.5100.0GSM284391Arabidopsis GPE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
312.1100.0GSM284394Arabidopsis GCE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
284.6100.0GSM284392Arabidopsis GCE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
255.8100.0GSM284390Arabidopsis GPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
249.0100.0GSM311279Laser capture microdissected (LCM) chalazal endosperm at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
202.6100.0GSM311273Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
197.7100.0GSM311288Laser capture microdissected (LCM) embryo proper at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
188.5100.0GSM284386Arabidopsis GSUS3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
188.4100.0GSM311285Laser capture microdissected (LCM) whole seed sections at the pre-globular stage, biological replicate 1GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
178.5100.0GSM311274Laser capture microdissected (LCM) embryo proper at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.424e-69262At3g48800824041sterile alpha motif (SAM) domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOC.G.S.X.
0.021e-448At2g39830818570DAR2 (DA1-RELATED PROTEIN 2)F:zinc ion binding;P:unknown;C:chloroplast;MOPFBC.G.S.X.
0.035e-446At5g52200835296unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPVC.G.S.X.
0.055e-446At2g29125817461RTFL2 (ROTUNDIFOLIA LIKE 2)F:molecular_function unknown;P:shoot development;C:chloroplast;OMFBPVAC.G.S.X.
0.022e-344At5g17690831635TFL2 (TERMINAL FLOWER 2)Regulates the meristem response to light signals and the maintenance of inflorescence meristem identity. Influences developmental processes controlled by APETALA1. TFL2 silences specific genes within euchromatin but not genes positioned in heterochromatin. TFL2 protein localized preferentially to euchromatic regions and not to heterochromatic chromocenters. Involved in euchromatin organization. Required for epigenetic maintenance of the vernalized state.C.G.S.X.
0.032e-344At5g63650836485SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)encodes a member of SNF1-related protein kinases (SnRK2) whose activity is activated by ionic (salt) and non-ionic (mannitol) osmotic stress.C.G.S.X.
0.022e-344At4g21660828253proline-rich spliceosome-associated (PSP) family proteinF:unknown;P:mRNA processing;C:nucleus, chloroplast;MOFPVBAC.G.S.X.
0.022e-344At3g18480821377AtCASP (Arabidopsis thaliana CCAAT-displacement protein alternatively spliced product)This gene is predicted to encode a protein that functions as a Golgi apparatus structural component, known as a golgin in mammals and yeast. A fluorescently-tagged version of CASP co-localizes with Golgi markers, and this localization appears to require the C-terminal (565689aa) portion of the protein. The protein is inserted into a membrane in a type II orientation.C.G.S.X.
0.032e-344At3g28200822446peroxidase, putativeF:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOBC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.113e-963Glycine maxGmaAffx.51870.1.A1_atAW348434--5e-11At3g48800sterile alpha motif (SAM) domain-containing proteinC.G.S.X.
0.051e-240Hordeum vulgareEBro01_SQ001_M06_atEBro01_SQ001_M06--8e-1At5g20885zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.049e-446Oryza sativaOs12g06279009640.m04263--2e-1At1g48990glycine-rich protein / oleosinC.G.S.X.
0.177e-1375Populus trichocarpaPtpAffx.73737.1.S1_atDN498080hypothetical protein-2e-13At5g23680sterile alpha motif (SAM) domain-containing proteinC.G.S.X.
0.058e-652Triticum aestivumTaAffx.5357.1.S1_atCA713422--5e-1At2g23320WRKY15C.G.S.X.
0.142e-961Vitis vinifera1622740_atCF373305hypothetical protein LOC100245808-4e-9At5g23680sterile alpha motif (SAM) domain-containing proteinC.G.S.X.
0.035e-238Zea maysZmAffx.783.1.S1_atAI745854--8e-7At1g51730RWD domain-containing proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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