Gene omics information

Query gene ID At5g23520
Gene name -
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g23520832417-F:unknown;P:unknown;C:cytoplasm;FPMBOS.X.H.G.
0.5773.8At3g03740821170ATBPM4 (BTB-POZ and MATH domain 4)F:protein binding;P:biological_process unknown;C:unknown;MPOFVS.X.H.G.
0.5267.4At4g33890829532unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOS.X.H.G.
0.5267.4At3g56740824841ubiquitin-associated (UBA)/TS-N domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;FMPOBS.X.H.G.
0.5166.3At3g52120824376SWAP (Suppressor-of-White-APricot)/surp domain-containing protein / D111/G-patch domain-containing proteinF:RNA binding, nucleic acid binding;P:RNA processing;C:intracellular;MPFOS.X.H.G.
0.5065.3At4g00170828017vesicle-associated membrane family protein / VAMP family proteinF:structural molecule activity;P:biological_process unknown;C:cellular_component unknown;MPFOS.X.H.G.
0.4761.2At4g39370830092UBP27 (UBIQUITIN-SPECIFIC PROTEASE 27)Encodes a ubiquitin-specific protease.S.X.H.G.
0.4659.8At5g07270830618ankyrin repeat family proteinF:ubiquitin-protein ligase activity, protein binding;P:N-terminal protein myristoylation;C:unknown;MOFBPVAS.X.H.G.
0.4659.8At5g55500835643XYLT (ARABIDOPSIS THALIANA BETA-1,2-XYLOSYLTRANSFERASE)Encodes a beta-1,2-xylosyltransferase that is glycosylated at two positions.S.X.H.G.
0.4558.3At3g12100820384cation efflux family protein / metal tolerance protein, putativeF:cation transmembrane transporter activity, efflux transmembrane transporter activity;P:cation transport, response to nematode;C:membrane;BMFOPAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
67.699.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
43.999.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
42.799.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.999.8GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
41.899.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
40.999.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
36.999.7GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
34.599.7GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.399.7GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
32.999.7GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.016e-136At5g06940830585leucine-rich repeat family proteinF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAC.G.S.X.
0.016e-136At3g52010824364scpl37 (serine carboxypeptidase-like 37)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOBC.G.S.X.
0.016e-136At3g52000824363scpl36 (serine carboxypeptidase-like 36)F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFBOC.G.S.X.
0.026e-136At3g44460823571DPBF2basic leucine zipper transcription factor (BZIP67), identical to basic leucine zipper transcription factor GI:18656053 from (Arabidopsis thaliana); identical to cDNA basic leucine zipper transcription factor (atbzip67 gene) GI:18656052. Located in the nucleus and expressed during seed maturation in the cotyledons.C.G.S.X.
0.016e-136At1g11340837676S-locus lectin protein kinase family proteinF:in 7 functions;P:protein amino acid phosphorylation, recognition of pollen;C:endomembrane system;MPOBFVAC.G.S.X.
0.013e+034At5g61540836275L-asparaginase, putative / L-asparagine amidohydrolase, putativeF:asparaginase activity, hydrolase activity;P:glycoprotein catabolic process;C:endomembrane system;BOMPAFC.G.S.X.
0.013e+034At4g25920828698unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PC.G.S.X.
0.013e+034At4g23250828424EMB1290 (EMBRYO DEFECTIVE 1290)F:protein kinase activity, kinase activity;P:embryonic development ending in seed dormancy, protein amino acid autophosphorylation;C:plasma membrane;MPOBFVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.029e-136Glycine maxGmaAffx.50897.1.S1_atBM177461--1e+0At5g22170unknown proteinC.G.S.X.
0.023e-136Hordeum vulgareContig19104_atContig19104--4e-1At5g38700unknown proteinC.G.S.X.
0.025e+034Oryza sativaOs10g01768009638.m00852--2e-2At5g28630glycine-rich proteinC.G.S.X.
0.032e-861Populus trichocarpaPtpAffx.212104.1.S1_atpmrna23740hypothetical protein-1e-8At5g23520-C.G.S.X.
0.023e+034Triticum aestivumTaAffx.92258.1.A1_atBJ273641--1e+1At3g09280unknown proteinC.G.S.X.
0.028e-134Vitis vinifera1612295_atCF512417--7e-32At5g56630PFK7 (PHOSPHOFRUCTOKINASE 7)C.G.S.X.
0.024e+032Zea maysZmAffx.440.1.A1_atAI676978--2e-4At1g54410dehydrin family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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