Gene omics information

Query gene ID At5g23480
Gene name DNA binding
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g23480832414DNA bindingF:DNA binding;P:histone modification, transcription initiation;C:nucleus;PS.X.H.G.
0.9797.6At3g49450824107F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.9797.6At4g20500827798transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.9597.0At5g60250836147zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding, nucleic acid binding;P:unknown;C:unknown;MFPOBS.X.H.G.
0.9597.0At3g12060820380unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;PBMS.X.H.G.
0.9496.7At3g01015821318-F:unknown;P:unknown;C:unknown;PMOFS.X.H.G.
0.9496.7At5g27610832823DNA binding / transcription factorF:transcription factor activity, DNA binding;P:biological_process unknown;C:cellular_component unknown;MOPFBVS.X.H.G.
0.9496.7At1g23210838930AtGH9B6 (Arabidopsis thaliana glycosyl hydrolase 9B6)F:hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:endomembrane system;PBMOFS.X.H.G.
0.9496.7At5g49150834974GEX2 (GAMETE EXPRESSED 2)Encodes a transmembrane domain containing protein expressed in sperm cells.S.X.H.G.
0.9496.7At2g44190819026EDE1 (ENDOSPERM DEFECTIVE 1)Encodes a novel microtubule binding protein that preferentially associates with nuclear microtubules during mitosis and is essential during the mitotic and cytokinetic stages that generate the endosperm and embryo.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
1027.3100.0E-ATMX-35-raw-cel-1574334800
702.9100.0E-ATMX-35-raw-cel-1574334832
415.0100.0E-ATMX-35-raw-cel-1574334816
189.3100.0GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
188.0100.0GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
184.2100.0GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
179.1100.0GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
161.499.9GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
154.999.9GSM253648Col-0-1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
150.899.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.114e-548At1g36950840604zinc finger protein-relatedF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVC.G.S.X.
0.062e-446At5g08430830742SWIB complex BAF60b domain-containing protein / plus-3 domain-containing protein / GYF domain-containing proteinF:DNA binding;P:histone modification, transcription initiation;C:nucleus;PMOFC.G.S.X.
0.057e-444At2g46030819211UBC6 (ubiquitin-conjugating enzyme 6)Ubiquitin conjugating enzyme E2C.G.S.X.
0.031e-240At3g07220819910transcriptional activator, putativeF:transcription activator activity;P:biological_process unknown;C:cellular_component unknown;FMPOC.G.S.X.
0.051e-240At3g17160820973unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPVAC.G.S.X.
0.054e-238At1g51700841595ADOF1Encodes dof zinc finger protein (adof1).C.G.S.X.
0.014e-238At1g69220843253SIK1Encodes a putative serine/threonine kinase (SIK1).C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.046e-238Glycine maxGmaAffx.38078.1.S1_atCD405216--4e-4At5g3985040S ribosomal protein S9 (RPS9C)C.G.S.X.
0.071e-342Hordeum vulgareHX10K21r_atHX10K21r--3e-3At5g23480DNA bindingC.G.S.X.
0.068e-238Oryza sativaOsAffx.18695.1.S1_at---0C.G.S.X.
0.076e-238Populus trichocarpaPtpAffx.209859.1.S1_atpmrna19433hypothetical protein-2e-2At5g23480DNA bindingC.G.S.X.
0.063e-342Triticum aestivumTaAffx.78729.1.S1_x_atCA594370--4e-3At5g23480DNA bindingC.G.S.X.
0.063e-340Vitis vinifera1608560_atCF405443hypothetical protein LOC100250989-3e+0At3g09890ankyrin repeat family proteinC.G.S.X.
0.043e-134Zea maysZm.17421.1.A1_atCF626527auxin-repressed protein-1e+0At3g16870zinc finger (GATA type) family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006352Any process involved in the assembly of the RNA polymerase complex at the promoter region of a DNA template, resulting in the subsequent synthesis of RNA from that promoter.
LGO:0016570The covalent alteration of one or more amino acid residues within a histone protein.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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