Gene omics information

Query gene ID At5g23405
Gene name high mobility group (HMG1/2) family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g23405832406high mobility group (HMG1/2) family proteinF:DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;MPOFBVS.X.H.G.
0.3643.6At1g79880844327La domain-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:ribonucleoprotein complex, nucleus;MFPOS.X.H.G.
0.2420.7At1g48620841283HON5 (High Mobility Group Family A 5)This gene is predicted to encodes a histone H1/H5 family member. A plant line expressing an RNAi construct targeted against HON5 shows a reduced level of agrobacterium-mediated root transformation.S.X.H.G.
0.2319.3At3g48710824032-F:unknown;P:unknown;C:unknown;MOBFPVAS.X.H.G.
0.2217.5At2g33610817927ATSWI3B (SWITCH SUBUNIT 3)Homologous to yeast SWI3 & RSC8, components of the SWI/SNF and RSC chromatin remodeling complexes. Interacts with BSH, AtSWI3A, SWI3C and FCA. Expressed ubiquitously.S.X.H.G.
0.1811.4At5g05540830437SDN2 (SMALL RNA DEGRADING NUCLEASE 2)F:exonuclease activity, nucleic acid binding;P:unknown;C:intracellular;MFPOBS.X.H.G.
0.157.8At3g01300820989protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAS.X.H.G.
0.146.8At2g40930818691UBP5 (UBIQUITIN-SPECIFIC PROTEASE 5)Encodes ubiquitin-specific protease with nuclear localization signals that is likely to be involved in ubiquitin-mediated protein degradation.S.X.H.G.
0.146.8At5g16260831486RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:unknown;C:unknown;MFPOBS.X.H.G.
0.135.8At5g37370833711ATSRL1encodes a putative splicing factor. Over-expression in yeast and Arabidopsis result in increased tolerance to high salt.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
56.299.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
49.299.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
46.099.8GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
43.299.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.299.8GSM311282Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
41.899.8GSM284396Arabidopsis GPSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
41.299.8GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
41.199.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
35.999.7GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
34.299.7GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.294e-1581At5g23420832408HMGB6Encodes HMGB6, a protein belonging to the subgroup of HMGB (high mobility group B) proteins. Localized in the nucleus. Binds to supercoiled DNA in vitro. HMGB6 is phosphorylated by protein kinase CK2alpha within its acidic C-terminal domain.C.G.S.X.
0.034e-342At5g14390831290-F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;OBMPFVC.G.S.X.
0.044e-342At1g51730841598RWD domain-containing proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBC.G.S.X.
0.011e-240At1g06900837200catalytic/ metal ion binding / metalloendopeptidase/ zinc ion bindingF:metalloendopeptidase activity, catalytic activity, zinc ion binding, metal ion binding;P:proteolysis;C:cellular_component unknown;MOBFPVAC.G.S.X.
0.001e-240At1g70320843368UPL2 (UBIQUITIN-PROTEIN LIGASE 2)encodes a ubiquitin-protein ligase-like protein containing a HECT domain. There are six other HECT-domain UPLs in Arabidopsis.C.G.S.X.
0.036e-238At4g03210828024XTH9 (XYLOGLUCAN ENDOTRANSGLUCOSYLASE/HYDROLASE 9)encodes a member of xyloglucan endotransglucosylase/hydrolases (XTHs) that catalyze the cleavage and molecular grafting of xyloglucan chains function in loosening and rearrangement of the cell wall. Gene is expressed in shoot apex region, flower buds, flower stalks and internodes bearing flowers.C.G.S.X.
0.026e-238At2g25180817056ARR12 (ARABIDOPSIS RESPONSE REGULATOR 12)Encodes an Arabidopsis response regulator (ARR) protein that acts in concert with other type-B ARRs in the cytokinin signaling pathway.C.G.S.X.
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Orthologous genes



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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.063e-136Glycine maxGma.5891.1.S1_atBQ610212--1e-1At5g23405high mobility group (HMG1/2) family proteinC.G.S.X.
0.064e-134Hordeum vulgareContig22019_atContig22019--7e-1At5g23405high mobility group (HMG1/2) family proteinC.G.S.X.
0.067e-342Oryza sativaOs08g01262009636.m00237--2e-4At3g50550unknown proteinC.G.S.X.
0.053e-136Populus trichocarpaPtpAffx.215294.1.S1_atpmrna29389hypothetical protein-1e-1At5g23405high mobility group (HMG1/2) family proteinC.G.S.X.
0.042e-136Triticum aestivumTaAffx.827.1.A1_atBJ310377--3e-1At5g23405high mobility group (HMG1/2) family proteinC.G.S.X.
0.081e-342Vitis vinifera1612070_atCF413850hypothetical protein LOC100247584-2e-11At5g23420HMGB6C.G.S.X.
0.042e-238Zea maysZm.6201.1.A1_atBE643575--1e-1At3g50690leucine-rich repeat family proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
CGO:0006355Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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