CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g23320

Gene name ATSTE14A (ARABIDOPSIS HOMOLOG OF YEAST STE14 A)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.71 84.2 At5g23320 832396 ATSTE14A (ARABIDOPSIS HOMOLOG OF YEAST STE14 A) Encodes a prenylcysteine alpha-carboxyl methyltransferase involved in methylation of isoprenylated proteins. This protein appears to have lower catalytic activity and a lower transcript expression level than the other ICMT present in Arabidopsis (At5g08335). Analysis of ICMT RNAi lines suggests that this protein may be involved in flower and stem development. S.X. H.G.
0.44 57.2 At5g02690 831838 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P S.X. H.G.
0.44 57.2 At1g63150 842619 pentatricopeptide (PPR) repeat-containing protein Transacting siRNA generating locus. S.X. H.G.
0.43 55.3 At1g09680 837496 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBA S.X. H.G.
0.40 50.8 At1g67400 843060 - F:unknown;P:phagocytosis;C:cytoskeleton;MPOF S.X. H.G.
0.39 48.4 At5g49410 835001 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.39 48.4 At5g07400 830631 forkhead-associated domain-containing protein / FHA domain-containing protein F:hydrolase activity, acting on acid anhydrides, in phosphorus-containing anhydrides, phosphoric diester hydrolase activity, zinc ion binding, nucleic acid binding;P:DNA repair;C:nucleus;MFOPB S.X. H.G.
0.37 45.0 At5g63820 836502 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.36 43.6 At5g02670 831844 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.36 43.6 At1g55250 841968 HUB2 (HISTONE MONO-UBIQUITINATION 2) Encodes one of two orthologous E3 ubiquitin ligases in Arabidopsis that are involved in monoubiquitination of histone H2B. S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
264.2 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
241.8 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
241.1 100.0 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
236.8 100.0 GSM143306 High_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
226.0 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
207.9 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
206.0 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
197.3 100.0 GSM253647 Col-0 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
194.0 100.0 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
192.7 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.80 1e-58 226 At5g08335 830731 ATSTE14B Encodes an isoprenyl cysteine methylatransferase (ICMT) involved in the post-translational processing of proteins that have a C-terminal CaaX box. This protein appears to have higher catalytic activity and a higher transcript expression level than the other ICMT present in Arabidopsis (At5g23320). Analysis of ICMT RNAi lines suggests that this protein is involved in flower and stem development. C.G. S.X.
0.02 3e-1 36 At2g35580 818123 serpin family protein / serine protease inhibitor family protein F:serine-type endopeptidase inhibitor activity;P:biological_process unknown;C:cellular_component unknown;MVBPOAF C.G. S.X.
0.02 1e+0 34 At4g25580 828663 stress-responsive protein-related F:unknown;P:unknown;C:cellular_component unknown;PMOFBV C.G. S.X.
0.03 1e+0 34 At3g06545 819833 unknown protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
0.01 1e+0 34 At2g01440 814672 ATP binding / ATP-dependent DNA helicase/ ATP-dependent helicase/ helicase/ nucleic acid binding F:ATP-dependent DNA helicase activity, helicase activity, nucleic acid binding, ATP-dependent helicase activity, ATP binding;P:DNA repair, DNA recombination;C:unknown;BOMFPAV C.G. S.X.
0.03 1e+0 34 At2g41110 818710 CAM2 (CALMODULIN 2) Encodes a touch-inducible calmodulin that has higher affinity to kinesin-like calmodulin binding motor protein than CAM4 or CAM6. C.G. S.X.
0.01 1e+0 34 At1g51538 5007789 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB C.G. S.X.
0.05 5e+0 32 At5g63500 836469 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 6e+0 32 Glycine max HgAffx.17361.1.S1_at CB278995 - - 2e+0 At5g23320 ATSTE14A (ARABIDOPSIS HOMOLOG OF YEAST STE14 A) C.G. S.X.
0.03 9e+0 30 Hordeum vulgare HW06H18u_at HW06H18u - - 2e-7 At3g62220 serine/threonine protein kinase, putative C.G. S.X.
0.02 6e-1 36 Oryza sativa Os08g0112600 AK070703.1 - Conserved hypothetical protein 1e-1 At5g13850 NACA3 (NASCENT POLYPEPTIDE-ASSOCIATED COMPLEX SUBUNIT ALPHA-LIKE PROTEIN 3) C.G. S.X.
0.03 4e-1 36 Populus trichocarpa PtpAffx.150447.1.S1_s_at DN499359 hypothetical protein - 4e-13 At2g45490 AtAUR3 (ATAURORA3) C.G. S.X.
0.05 5e+0 32 Triticum aestivum TaAffx.250.1.A1_at AJ609805 - - 2e+0 At5g08335 ATSTE14B C.G. S.X.
0.08 3e-1 34 Vitis vinifera 1619037_at CB919817 hypothetical protein LOC100245637 - 1e+0 At5g23320 ATSTE14A (ARABIDOPSIS HOMOLOG OF YEAST STE14 A) C.G. S.X.
0.04 8e+0 30 Zea mays ZmAffx.1078.1.S1_at AI948227 - - 3e-2 At3g22845 emp24/gp25L/p24 protein-related C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0006481 The methylation of the C-terminal amino acid of a protein.
X GO:0009908 The process whose specific outcome is the progression of the flower over time, from its formation to the mature structure. The flower is the reproductive structure in a plant, and its development begins with the transition of the vegetative or inflorescence meristem into a floral meristem.
X GO:0048367 The process whose specific outcome is the progression of the shoot over time, from its formation to the mature structure.
N GO:0009788 Any process that stops, prevents or reduces the frequency, rate or extent of signal transduction mediated by abscisic acid.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage