CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g23240

Gene name DNAJ heat shock N-terminal domain-containing protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.40 50.8 At5g23240 832388 DNAJ heat shock N-terminal domain-containing protein F:unfolded protein binding, heat shock protein binding;P:protein folding;C:chloroplast;BOMPFAV S.X. H.G.
0.40 50.8 At5g42900 834301 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.33 38.1 At3g07650 819956 COL9 (CONSTANS-LIKE 9) This gene belongs to the CO (CONSTANS) gene family. This gene family is divided in three subgroups: groups III, to which COL9 belongs, is characterised by one B-box (supposed to regulate protein-protein interactions) and a second diverged zinc finger. COL9 downregulates expression of CO (CONSTANS) as well as FT and SOC1 which are known regulatory targets of CO. S.X. H.G.
0.25 22.6 At1g07050 837216 CONSTANS-like protein-related F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POF S.X. H.G.
0.02 0.4 At1g68600 843190 unknown protein F:unknown;P:biological_process unknown;C:cellular_component unknown;BPFO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
60.3 99.8 GSM133738 Buchanan-Wollaston_A-10-bwoll-Co2_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
48.8 99.8 GSM133737 Buchanan-Wollaston_A-9-bwoll-Co1_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
36.1 99.7 E-ATMX-32-raw-cel-1562974409
34.2 99.7 GSM133736 Buchanan-Wollaston_A-8-bwoll-Ei2_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
31.5 99.7 E-ATMX-32-raw-cel-1562974681
31.1 99.7 E-ATMX-32-raw-cel-1562974621
30.8 99.7 GSM133730 Buchanan-Wollaston_A-2-bwoll-C5G_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
29.9 99.7 GSM133732 Buchanan-Wollaston_A-4-bwoll-C5S_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
27.4 99.7 GSM133735 Buchanan-Wollaston_A-7-bwoll-Ei1_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
27.3 99.7 GSM133734 Buchanan-Wollaston_A-6-bwoll-NG2_SLD GSE5727 The effects of mutants in stress response pathways on gene expression during senescence
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 2e-1 38 At5g23420 832408 HMGB6 Encodes HMGB6, a protein belonging to the subgroup of HMGB (high mobility group B) proteins. Localized in the nucleus. Binds to supercoiled DNA in vitro. HMGB6 is phosphorylated by protein kinase CK2alpha within its acidic C-terminal domain. C.G. S.X.
0.01 7e-1 36 At5g55920 835690 nucleolar protein, putative F:S-adenosylmethionine-dependent methyltransferase activity, RNA binding;P:rRNA processing;C:nucleolus;BMOFPVA C.G. S.X.
0.02 7e-1 36 At5g40120 834009 AGL76 (AGAMOUS-LIKE 76) F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;POB C.G. S.X.
0.01 7e-1 36 At5g26710 832718 glutamate-tRNA ligase, putative / glutamyl-tRNA synthetase, putatuve / GluRS, putative F:glutamate-tRNA ligase activity;P:glutamyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAP C.G. S.X.
0.01 7e-1 36 At2g32560 817817 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PO C.G. S.X.
0.01 3e+0 34 At5g47850 834836 CCR4 (ARABIDOPSIS THALIANA CRINKLY4 RELATED 4) F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 3e+0 34 At5g64930 836617 CPR5 (CONSTITUTIVE EXPRESSION OF PR GENES 5) Regulator of expression of pathogenesis-related (PR) genes. Participates in signal transduction pathways involved in plant defense (systemic acquired resistance -SAR). C.G. S.X.
0.02 3e+0 34 At5g24890 832558 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOPFB C.G. S.X.
0.02 3e+0 34 At5g51580 835232 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MP C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 4e-3 44 Glycine max GmaAffx.67823.2.S1_at BG043066 - - 1e-3 At5g23240 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.02 5e+0 32 Hordeum vulgare Contig9249_at Contig9249 - - 1e+0 At3g15110 unknown protein C.G. S.X.
0.02 1e+0 36 Oryza sativa Os10g0132000 9638.m00330 - - 2e-2 At1g67195 MIR414 (MICRORNA 414) C.G. S.X.
0.02 1e+0 36 Populus trichocarpa PtpAffx.142632.1.A1_at CK087808 - - 1e+0 At1g74730 unknown protein C.G. S.X.
0.02 7e-1 36 Triticum aestivum TaAffx.97823.1.S1_at BQ803106 - - 4e+0 At1g73602 CPuORF32 (Conserved peptide upstream open reading frame 32) C.G. S.X.
0.02 8e-1 34 Vitis vinifera 1622246_at CF212159 - - 2e-1 At4g34800 auxin-responsive family protein C.G. S.X.
0.02 5e+0 32 Zea mays Zm.9686.1.A1_at BM335645 - - 5e+0 At5g01734 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006457 The process of assisting in the covalent and noncovalent assembly of single chain polypeptides or multisubunit complexes into the correct tertiary structure.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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