Gene omics information

Query gene ID At5g23110
Gene name zinc finger (C3HC4-type RING finger) family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g23110832375zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding, ATP binding;P:unknown;C:unknown;MPOFVBS.X.H.G.
0.5570.6At5g47480834798unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFBPAVS.X.H.G.
0.4050.8At3g02260820398BIG (BIG)Calossin-like protein required for polar auxin transportS.X.H.G.
0.146.8At3g59770825146SAC9Encodes a phosphoinositide phosphatase. The sac9 null mutant accumulates elevated levels of PtdIns(4,5)P2 and Ins(1,4,5)P3. The mutant plants have characteristics of constitutive stress responses.S.X.H.G.
0.071.9At5g06120830499Ran-binding protein, putativeF:protein transporter activity, binding;P:intracellular protein transport, protein import into nucleus, docking;C:nucleus, nuclear pore, cytoplasm;MOPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
30.899.7GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
29.399.7GSM142904WW002_ATH1_A1-willa-CON-REP2GSE6181Assembly of the cell wall pectic matrix.
24.499.6GSM133117RIKEN-YAMAUCHI1AGSE5687AtGenExpress: Different temperature treatment of seeds
22.499.6GSM184552Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
21.699.6GSM142902WW001_ATH1_A1-WILLA-CONGSE6181Assembly of the cell wall pectic matrix.
16.199.5GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
13.499.4GSM142641MC002_ATH1_A7.1-dubos-wLhGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
12.099.3GSM133773Lindsey_1-25_torpedo-meristem_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
11.799.3GSM142647MC002_ATH1_A9.1-dubos-aahGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
11.699.3GSM142649MC002_ATH1_A9.3-dubos-aahGSE6151The mechanisms involved in the interplay between dormancy and secondary growth in Arabidopsis
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.001e-142At3g11680820340unknown proteinF:unknown;P:unknown;C:unknown;BPFOC.G.S.X.
0.005e-140At5g41680834170protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:unknown;PMOBFVAC.G.S.X.
0.005e-140At3g54440824610glycoside hydrolase family 2 proteinF:carbohydrate binding, cation binding, beta-galactosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds, catalytic activity;P:carbohydrate metabolic process;C:chloroplast;BOMFPAC.G.S.X.
0.005e-140At3g10360820198APUM4 (Arabidopsis Pumilio 4)F:RNA binding, binding;P:biological_process unknown;C:cellular_component unknown;FOMPBC.G.S.X.
0.002e+038At3g26180822219CYP71B20putative cytochrome P450C.G.S.X.
0.002e+038At2g25360817075zinc finger protein-relatedF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.002e-142Glycine maxGmaAffx.14034.1.S1_atBI944018--9e-13At2g16050-C.G.S.X.
0.009e-138Hordeum vulgareHVSMEg0002C10r2_atHVSMEg0002C10r2--1e+0At5g17950unknown proteinC.G.S.X.
0.071e-55222Oryza sativaOs04g0675400AK068186.1-Heat shock protein DnaJ family protein9e-1At2g28710zinc finger (C2H2 type) family proteinC.G.S.X.
0.212e-115420Populus trichocarpaPtpAffx.205253.1.S1_atpmrna10414hypothetical protein-7e-116At5g23110zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.005e-140Triticum aestivumTaAffx.82110.1.S1_atCA677442--6e-1At4g17245zinc finger (C3HC4-type RING finger) family proteinC.G.S.X.
0.005e-138Vitis vinifera1612607_atCB349690hypothetical protein LOC100259476-2e-1At5g63650SNRK2.5 (SNF1-RELATED PROTEIN KINASE 2.5)C.G.S.X.
0.002e-140Zea maysZm.4467.2.A1_atAA979767hypothetical protein LOC100193777-6e-9At4g18440adenylosuccinate lyase, putative / adenylosuccinase, putativeC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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