CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g23030

Gene name TET12 (TETRASPANIN12)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g23030 832367 TET12 (TETRASPANIN12) Member of TETRASPANIN family S.X. H.G.
0.83 91.4 At1g18940 838475 nodulin family protein F:unknown;P:unknown;C:endomembrane system;BPOFMA S.X. H.G.
0.77 88.0 At4g30560 829179 ATCNGC9 (CYCLIC NUCLEOTIDE GATED CHANNEL 9) member of Cyclic nucleotide gated channel family S.X. H.G.
0.73 85.5 At1g11100 837651 SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related F:in 6 functions;P:unknown;C:unknown;MBFOPVA S.X. H.G.
0.71 84.2 At4g32440 829379 agenet domain-containing protein F:RNA binding;P:biological_process unknown;C:unknown;P S.X. H.G.
0.71 84.2 At1g70590 843396 F-box family protein F:binding;P:biological_process unknown;C:chloroplast;BOFMPV S.X. H.G.
0.70 83.5 At2g21930 816729 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.68 82.2 At5g05130 830395 SNF2 domain-containing protein / helicase domain-containing protein / RING finger domain-containing protein F:in 7 functions;P:unknown;C:unknown;MOBFPVA S.X. H.G.
0.68 82.2 At4g02730 828189 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:biological_process unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFOPBAV S.X. H.G.
0.68 82.2 At2g30580 817608 DRIP2 (DREB2A-INTERACTING PROTEIN 2) Encodes a C3HC4 RING-domain-containing ubiquitin E3 ligase capable of interacting with DREB2A. DRIP2 seems to be involved in regulating stress-related transcriptional changes and drought tolerance. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
284.6 100.0 E-ATMX-35-raw-cel-1574334800
258.9 100.0 E-ATMX-35-raw-cel-1574334832
253.6 100.0 E-ATMX-35-raw-cel-1574334816
232.5 100.0 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
171.5 100.0 GSM226549 Slice7JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
136.5 99.9 GSM184837 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7 GSE7639 Expression analysis of root developmental zones after treatment with salt
136.2 99.9 GSM265431 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
128.5 99.9 GSM265430 Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
119.0 99.9 GSM205428 met1-3_leaf_fourth-selfed generation_rep01 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
114.2 99.9 GSM226538 L8SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 4e-1 36 At3g24840 822082 SEC14 cytosolic factor, putative / phosphoglyceride transfer protein, putative F:transporter activity;P:transport;C:intracellular;MPFO C.G. S.X.
0.02 2e+0 34 At5g60850 836206 OBP4 Encodes a zinc finger protein. C.G. S.X.
0.01 2e+0 34 At4g36210 829778 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;FMOBPA C.G. S.X.
0.01 2e+0 34 At3g18290 821357 EMB2454 (embryo defective 2454) F:protein binding, zinc ion binding;P:embryonic development ending in seed dormancy;C:unknown;MPOFBV C.G. S.X.
0.02 2e+0 34 At2g34010 817962 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFO C.G. S.X.
0.03 2e+0 34 At1g15230 838090 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e-1 36 Glycine max HgAffx.23789.1.S1_s_at CB375467 - - 3e-1 At5g23030 TET12 (TETRASPANIN12) C.G. S.X.
0.03 8e-1 34 Hordeum vulgare M58754_at M58754 - - 4e-1 At3g05020 ACP1 (acyl carrier protein 1) C.G. S.X.
0.03 3e+0 34 Oryza sativa Os11g0623300 9639.m03735 - - 1e-3 At2g11910 unknown protein C.G. S.X.
0.03 1e-1 38 Populus trichocarpa Ptp.7401.1.A1_at DN486023 - - 6e-2 At5g23030 TET12 (TETRASPANIN12) C.G. S.X.
0.03 4e-1 36 Triticum aestivum TaAffx.24261.1.S1_at CA723138 - - 2e+0 At4g21330 DYT1 (DYSFUNCTIONAL TAPETUM 1) C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1614509_at CF205971.1 - - 5e-3 At5g27200 ACP5 (acyl carrier protein 5) C.G. S.X.
0.03 3e+0 32 Zea mays Zm.10869.1.S1_at BM074344 - - 3e-1 At3g07510 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0007568 The inherent decline over time, from the optimal fertility and viability of early maturity, that may precede death and may be preceded by other indications, such as sterility.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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