CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g22890

Gene name zinc finger (C2H2 type) family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.33 38.1 At5g22890 832353 zinc finger (C2H2 type) family protein F:transcription factor activity;P:response to chitin, regulation of transcription;C:intracellular;MOPF S.X. H.G.
0.75 86.9 At4g25090 828612 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA S.X. H.G.
0.70 83.5 At5g05400 830422 disease resistance protein (CC-NBS-LRR class), putative F:protein binding, ATP binding;P:N-terminal protein myristoylation, defense response, apoptosis;C:chloroplast;PMBOFA S.X. H.G.
0.67 81.6 At1g31885 840079 transporter F:transporter activity;P:transport;C:integral to membrane, membrane;BPOMFAV S.X. H.G.
0.67 81.6 At3g45410 823679 lectin protein kinase family protein encodes a receptor-like kinase that has serine/threonine kinase activity whose expression is induced by high salt stress. This induction is inhibited by tobacco ethylene receptor. S.X. H.G.
0.60 75.7 At2g21045 816639 - F:unknown;P:aging;C:unknown;BOPAFM S.X. H.G.
0.56 73.0 At2g42350 818836 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;PMOFV S.X. H.G.
0.55 70.6 At1g78000 844135 SULTR1 Encodes a sulfate transporter that can restore sulfate uptake capacity of a yeast mutant lacking sulfate transporter genes. S.X. H.G.
0.53 68.6 At2g28960 817445 leucine-rich repeat protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.46 59.8 At1g07560 837270 leucine-rich repeat protein kinase, putative F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
53.3 99.8 GSM157332 Coates_1-4_ara1/2mut_Rep1_ATH1 GSE6826 Identification of candidate Arabidillo target genes in Arabidopsis
50.1 99.8 GSM157329 Coates_1-1_Col-0_Rep1_ATH1 GSE6826 Identification of candidate Arabidillo target genes in Arabidopsis
49.1 99.8 GSM157335 Coates_1-7_Col-3_Rep2_ATH1 GSE6826 Identification of candidate Arabidillo target genes in Arabidopsis
41.5 99.8 E-MEXP-828-raw-cel-1156922296
39.9 99.8 GSM131430 AtGen_6-8424_Woundingstress-Roots-6.0h_Rep2 GSE5627 AtGenExpress: Stress Treatments (Wounding stress)
39.0 99.8 GSM184539 Whole roots 2hr KCl control treated then frozen, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
37.4 99.7 GSM218596 Whole roots 3.5hr KNO3 treated then frozen, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
37.3 99.7 GSM157336 Coates_1-8_ara1/2mut_Rep2_ATH1 GSE6826 Identification of candidate Arabidillo target genes in Arabidopsis
36.0 99.7 GSM218592 Whole roots 3.5hr KCl control treated then frozen, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
34.5 99.7 GSM157331 Coates_1-3_Col-3_Rep1_ATH1 GSE6826 Identification of candidate Arabidillo target genes in Arabidopsis
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.09 9e-6 52 At1g34370 840339 STOP1 (sensitive to proton rhizotoxicity 1) Encodes a putative nuclear Cys(2)His(2)-type zinc finger protein involved in H+ and Al3+ rhizotoxicity. In mutants exposed to aluminum stress, there is no induction of AtALMT1, an malate transporter known to be involved in the mediation of aluminum toxicity. C.G. S.X.
0.02 1e-1 38 At4g36880 829841 CP1 (CYSTEINE PROTEINASE1) F:cysteine-type peptidase activity, cysteine-type endopeptidase activity;P:proteolysis, response to gibberellin stimulus, response to red light;C:endomembrane system;MOPVBAF C.G. S.X.
0.02 1e-1 38 At2g42975 818899 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;PMF C.G. S.X.
0.01 1e-1 38 At2g44430 819050 DNA-binding bromodomain-containing protein F:DNA binding;P:unknown;C:unknown;MOFBPVA C.G. S.X.
0.02 1e-1 38 At2g44195 819027 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFPO C.G. S.X.
0.01 1e-1 38 At1g07630 837276 PLL5 Encodes a protein phosphatase 2C like gene, similar to POL. Involved in leaf development. Knockout mutants have abnormally shaped leaves. C.G. S.X.
0.02 6e-1 36 At4g34740 829626 ATASE2 (GLN PHOSPHORIBOSYL PYROPHOSPHATE AMIDOTRANSFERASE 2) Encodes glutamine 5-phosphoribosylpyrophosphate amidotransferase. Mutants are deficient in leaf, but not cotyledon, plastid and palisade cell development. Mutants exhibit defective chloroplast development under non-low light, suggesting that the defect in chloroplast development is caused by photo-oxidative damage. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 8e-1 36 Glycine max GmaAffx.90415.1.S1_at CF806140 - - 6e-6 At1g34370 STOP1 (sensitive to proton rhizotoxicity 1) C.G. S.X.
0.03 4e-3 42 Hordeum vulgare Contig10370_at Contig10370 - - 2e-12 At1g34370 STOP1 (sensitive to proton rhizotoxicity 1) C.G. S.X.
0.06 1e-6 56 Oryza sativa OsAffx.13726.1.S1_x_at - - - 0 C.G. S.X.
0.19 6e-17 89 Populus trichocarpa PtpAffx.82248.1.A1_at CV254645 - - 4e-17 At5g22890 zinc finger (C2H2 type) family protein C.G. S.X.
0.03 6e-1 36 Triticum aestivum TaAffx.78150.1.S1_at CA736832 - - 1e+0 At3g12490 cysteine protease inhibitor, putative / cystatin, putative C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1611013_at CF518927 hypothetical protein LOC100243798 - 4e-1 At5g22890 zinc finger (C2H2 type) family protein C.G. S.X.
0.03 2e-5 50 Zea mays Zm.2957.1.A1_at CK371564 - - 5e-12 At1g34370 STOP1 (sensitive to proton rhizotoxicity 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0010200 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a chitin stimulus.
S GO:0045449 Any process that modulates the frequency, rate or extent of the synthesis of either RNA on a template of DNA or DNA on a template of RNA.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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