CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g22860

Gene name serine carboxypeptidase S28 family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.67 81.6 At5g22860 832349 serine carboxypeptidase S28 family protein F:serine-type peptidase activity, peptidase activity;P:proteolysis;C:endomembrane system;MOFPB S.X. H.G.
0.50 65.3 At1g57590 842135 carboxylesterase F:carboxylesterase activity;P:biological_process unknown;C:unknown;PMOB S.X. H.G.
0.40 50.8 At3g57680 824937 peptidase S41 family protein F:serine-type peptidase activity, protein binding;P:proteolysis, intracellular signaling cascade;C:chloroplast thylakoid lumen, membrane;OBPM S.X. H.G.
0.40 50.8 At4g24000 828500 ATCSLG2 encodes a protein similar to cellulose synthase S.X. H.G.
0.32 35.7 At2g25625 817103 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
289.8 100.0 GSM131603 ATGE_41_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
278.6 100.0 GSM131604 ATGE_41_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
231.9 100.0 GSM131605 ATGE_41_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
130.0 99.9 GSM269827 C2 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
122.6 99.9 GSM269819 C2 leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
105.9 99.9 GSM269823 T6 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
94.2 99.9 GSM269821 WT leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
93.4 99.9 GSM133025 BC181-1 GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
92.8 99.9 GSM133029 BC482-1 GSE5684 AtGenExpress: Pathogen Series: Response to Botrytis cinerea infection
89.8 99.9 GSM269813 WT leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.10 4e-15 83 At3g28680 822498 prolylcarboxypeptidase-related F:serine-type peptidase activity;P:proteolysis;C:endomembrane system;MPO C.G. S.X.
0.08 3e-9 63 At5g65760 836705 serine carboxypeptidase S28 family protein F:serine-type peptidase activity;P:proteolysis;C:chloroplast, vacuole;MOFPB C.G. S.X.
0.06 8e-4 46 At2g24280 816963 serine carboxypeptidase S28 family protein F:serine-type peptidase activity, serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system, lysosome;MOFPB C.G. S.X.
0.01 2e-1 38 At4g04500 825780 protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.01 2e-1 38 At4g09980 826589 EMB1691 (EMBRYO DEFECTIVE 1691) F:S-adenosylmethionine-dependent methyltransferase activity, methyltransferase activity, nucleic acid binding;P:embryonic development ending in seed dormancy;C:unknown;MOBFPVA C.G. S.X.
0.01 7e-1 36 At5g44760 834505 C2 domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PB C.G. S.X.
0.01 7e-1 36 At5g10420 830906 antiporter/ drug transporter F:drug transporter activity, antiporter activity;P:multidrug transport, ripening;C:membrane;BPOFMA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.06 7e-8 59 Glycine max GmaAffx.76078.1.S1_at CA938662 - - 2e-8 At5g22860 serine carboxypeptidase S28 family protein C.G. S.X.
0.02 1e+0 34 Hordeum vulgare Contig20267_at Contig20267 - - 4e+0 At5g42070 unknown protein C.G. S.X.
0.01 4e-1 38 Oryza sativa Os04g0295500 AK065384.1 - Conserved hypothetical protein 4e-1 At1g65040 protein binding / zinc ion binding C.G. S.X.
0.09 3e-4 48 Populus trichocarpa PtpAffx.225065.1.S1_at pmrna44149 hypothetical protein - 2e-4 At5g22860 serine carboxypeptidase S28 family protein C.G. S.X.
0.03 5e-2 40 Triticum aestivum TaAffx.77669.1.S1_at CA744460 - - 7e-1 At3g03220 ATEXPA13 (ARABIDOPSIS THALIANA EXPANSIN A13) C.G. S.X.
0.02 4e-3 42 Vitis vinifera 1614626_at CF208834 - - 1e-22 At5g65760 serine carboxypeptidase S28 family protein C.G. S.X.
0.02 1e+0 34 Zea mays Zm.7908.1.A1_at BM080382 - - 1e+0 At3g10020 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006508 The chemical reactions and pathways resulting in the breakdown of a protein by the destruction of the native, active configuration, with the hydrolysis of peptide bonds.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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