CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g22770

Gene name alpha-ADR (alpha-adaptin)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.67 81.6 At5g22770 832340 alpha-ADR (alpha-adaptin) F:protein transporter activity, protein binding, binding;P:intracellular protein transport, vesicle-mediated transport, protein transport;C:plasma membrane, membrane;MOFP S.X. H.G.
0.57 73.8 At5g60410 836163 SIZ1 Encodes a plant small ubiquitin-like modifier (SUMO) E3 ligase that is a focal controller of Pi starvation-dependent responses. Also required for SA and PAD4-mediated R gene signalling, which in turn confers innate immunity in Arabidopsis. Also involved in the regulation of plant growth, drought responses and freezing tolerance. This latter effect is most likely due to SIZ1 dependent ABI5 sumoylation. S.X. H.G.
0.40 50.8 At5g14950 831347 GMII (GOLGI ALPHA-MANNOSIDASE II) Encodes a golgi alpha-mannosidase, an enzyme responsible for the formation of major complex-type N-glycans. S.X. H.G.
0.38 46.7 At3g10380 820201 SEC8 (SUBUNIT OF EXOCYST COMPLEX 8) Subunit of the Putative Arabidopsis Exocyst Complex S.X. H.G.
0.21 15.8 At2g05170 815065 ATVPS11 Homologous to yeast VPS11. Forms a complex with VCL1 and AtVPS33. Involved in vacuolar biogenesis. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
25.1 99.6 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
15.0 99.4 GSM134208 Murray_3-4_D7-GROWTH_Rep1_ATH1 GSE5750 Growth of suspension-cultured cells
10.6 99.2 GSM128662 Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
9.5 99.1 E-MEXP-98-raw-cel-320189079
9.1 99.1 GSM322550 genotype: Wild-type Arabidopsis, ecotype Col-0 - treated or untreated: Bgh inoculated - rep3 GSE12856 Penetration resistance: Wildtype and ataf1-1 mutant response to Bgh 12 h after inoculation, 2*2 factorial design
8.7 99.0 E-MEXP-98-raw-cel-320188859
8.5 99.0 GSM128671 Underwood_1-24_hrpAfliC-10e8-7h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
8.4 99.0 E-MEXP-98-raw-cel-320189024
8.2 99.0 GSM128683 Underwood_1-36_E.coli-0157-H7-10e8-7h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
8.2 99.0 GSM128691 Helenius_1-4_ERD15 oex-ABA-treated_Rep1_ATH1 GSE5521 Comparative ABA-treatment of Col-O vector control and transgenic plants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.97 0 5289 At5g22780 832341 adaptin family protein F:protein transporter activity, protein binding, binding;P:intracellular protein transport, vesicle-mediated transport, protein transport;C:plasma membrane;MOFP C.G. S.X.
0.01 4e-1 38 At4g26300 828736 emb1027 (embryo defective 1027) F:nucleotide binding, aminoacyl-tRNA ligase activity, arginine-tRNA ligase activity, ATP binding;P:embryonic development ending in seed dormancy, arginyl-tRNA aminoacylation;C:mitochondrion, chloroplast;OBMAFPV C.G. S.X.
0.01 4e-1 38 At3g12780 820461 PGK1 (PHOSPHOGLYCERATE KINASE 1) nuclear phosphoglycerate kinase (PGK1) C.G. S.X.
0.01 4e-1 38 At1g20530 838641 unknown protein F:molecular_function unknown;P:N-terminal protein myristoylation;C:cellular_component unknown;OMPBFA C.G. S.X.
0.01 2e+0 36 At5g44750 834504 REV1 Homologous to Y-family DNA polymerases, contains BRCT domain. Mutants are sensitive to UV-B radiation. Gene is involved in damage-tolerance mechanisms through translesion synthesis(TLS). C.G. S.X.
0.01 2e+0 36 At3g50780 824242 - F:unknown;P:biological_process unknown;C:cellular_component unknown;PMO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.17 1e-23 113 Glycine max Gma.1492.1.S1_at CD399752 - - 1e-26 At5g22780 adaptin family protein C.G. S.X.
0.23 1e-76 287 Hordeum vulgare Contig5284_at Contig5284 - - 2e-82 At5g22780 adaptin family protein C.G. S.X.
0.01 2e-1 40 Oryza sativa Os03g0112400 AK063082.1 - AP2 adaptor, appendage domain containing protein 5e-2 At5g22770 alpha-ADR (alpha-adaptin) C.G. S.X.
0.56 0 833 Populus trichocarpa PtpAffx.204463.1.S1_at pmrna8750 hypothetical protein - 0 At5g22780 adaptin family protein C.G. S.X.
0.01 6e+0 34 Triticum aestivum TaAffx.31901.1.S1_at CA605455 - - 2e-1 At1g08695 SCRL3 (SCR-Like 3) C.G. S.X.
0.06 3e-11 69 Vitis vinifera 1612423_at CF214059 hypothetical protein LOC100241344 - 1e-11 At5g22770 alpha-ADR (alpha-adaptin) C.G. S.X.
0.01 2e-1 38 Zea mays Zm.12324.1.A1_at BQ703347 - - 3e-1 At2g28330 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006886 The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
L GO:0015031 The directed movement of proteins into, out of, within or between cells.
L GO:0016192 The directed movement of substances into, out of or within a cell by a cellular process that begins with the formation of membrane-bounded vesicles in which the transported substances are enclosed or located in the vesicle membrane. Vesicles are then targeted to, and fuse with, an acceptor membrane.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
04144 Endocytosis
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