Gene omics information

Query gene ID At5g22640
Gene name emb1211 (embryo defective 1211)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g22640832327emb1211 (embryo defective 1211)F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:chloroplast thylakoid membrane, chloroplast, chloroplast envelope;OMFBPVAS.X.H.G.
0.4457.2At5g10910830958mraW methylase family proteinF:methyltransferase activity;P:unknown;C:unknown;BOMPS.X.H.G.
0.2115.8At2g31400817698pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:unknown;C:chloroplast;POMFBAS.X.H.G.
0.071.9At3g29185822570unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPS.X.H.G.
0.020.4At2g41720818771EMB2654 (EMBRYO DEFECTIVE 2654)F:unknown;P:embryonic development ending in seed dormancy;C:unknown;POMFBAS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
245.4100.0GSM133760Lindsey_1-12_heart-stage-root_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
15.099.4GSM133775Lindsey_1-27_torpedo-meristem_Rep3_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
11.699.3GSM183514MYB29_OE_rep2GSE7570ATR1_like_Clade_OE_and_miR
10.899.2GSM183516MYB51_OE_rep1GSE7570ATR1_like_Clade_OE_and_miR
9.299.1GSM318627Apex_BLS>>TCP4_14DAS_2GSE12691Knockdown and overexpression of CIN-TCP genes
9.099.1GSM183513MYB29_OE_rep1GSE7570ATR1_like_Clade_OE_and_miR
8.799.0GSM183512MYB76_OE_rep2GSE7570ATR1_like_Clade_OE_and_miR
8.098.9GSM318331EL_14DAS_2GSE12676Arabidopsis thaliana Ler developmental series
7.498.8GSM18415235S:ATR1_like_miR_rep2GSE7570ATR1_like_Clade_OE_and_miR
7.398.8GSM157392Sakakibara_1-11_DMSO-treatment-mutant_Rep2_ATH1GSE6832Cytokinin treatment on aerial parts of seedlings
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.018e-240At2g37230818300pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:chloroplast thylakoid membrane;POMFBAC.G.S.X.
0.013e-138At5g56100835709glycine-rich protein / oleosinF:molecular_function unknown;P:lipid storage;C:monolayer-surrounded lipid storage body, integral to membrane, membrane;PBC.G.S.X.
0.013e-138At5g46910834736transcription factor jumonji (jmj) family proteinF:transcription factor activity;P:response to chitin, regulation of transcription;C:nucleus;MFPOC.G.S.X.
0.013e-138At5g19320832052RANGAP2 (RAN GTPASE ACTIVATING PROTEIN 2)Encodes RAN GTPase activating protein 2. The protein is localized to the nuclear envelope during interphase.C.G.S.X.
0.013e-138At5g17580831624phototropic-responsive NPH3 family proteinF:protein binding, signal transducer activity;P:response to light stimulus;C:cellular_component unknown;POAMC.G.S.X.
0.013e-138At5g58280835940transcriptional factor B3 family proteinF:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;PC.G.S.X.
0.013e-138At4g33890829532unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PFOC.G.S.X.
0.013e-138At4g33780829520-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e-140Glycine maxGmaAffx.52467.1.S1_atBF595051--8e-1At4g19580heat shock protein bindingC.G.S.X.
0.022e-138Hordeum vulgareContig17838_atContig17838--5e-1At4g01895systemic acquired resistance (SAR) regulator protein NIMIN-1-relatedC.G.S.X.
0.017e-138Oryza sativaOsAffx.31793.1.S1_at---0C.G.S.X.
0.057e-344Populus trichocarpaPtpAffx.222422.1.S1_atpmrna39810hypothetical protein-3e-3At5g22640emb1211 (embryo defective 1211)C.G.S.X.
0.019e-240Triticum aestivumTa.9469.1.S1_atCA498999--3e-7At2g18750calmodulin-binding proteinC.G.S.X.
0.024e-136Vitis vinifera1616251_atCF213754hypothetical protein LOC100247254-1e-4At2g22080unknown proteinC.G.S.X.
0.011e-138Zea maysZm.4760.1.A1_atAY108728.1hypothetical protein LOC100276972-5e-1At1g34000OHP2 (ONE-HELIX PROTEIN 2)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009793The process whose specific outcome is the progression of the embryo over time, from zygote formation to the end of seed dormancy. An example of this process is found in Arabidopsis thaliana.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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