CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g22570

Gene name WRKY38

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.46 59.8 At5g22570 832320 WRKY38 member of WRKY Transcription Factor; Group III S.X. H.G.
0.67 81.6 At2g30670 817617 tropinone reductase, putative / tropine dehydrogenase, putative F:oxidoreductase activity, binding, catalytic activity;P:metabolic process;C:cellular_component unknown;BOMFPAV S.X. H.G.
0.67 81.6 At5g41280 834129 - F:molecular_function unknown;P:biological_process unknown;C:anchored to plasma membrane, anchored to membrane;P S.X. H.G.
0.57 73.8 At3g12230 820403 scpl14 (serine carboxypeptidase-like 14) F:serine-type carboxypeptidase activity;P:proteolysis;C:endomembrane system;PMFOB S.X. H.G.
0.25 22.6 At3g11370 820309 DC1 domain-containing protein F:unknown;P:unknown;C:cellular_component unknown;PFOM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
157.0 99.9 GSM142904 WW002_ATH1_A1-willa-CON-REP2 GSE6181 Assembly of the cell wall pectic matrix.
145.9 99.9 GSM184479 Lateral Root Cap root cells 2hr transitory KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
145.7 99.9 GSM142902 WW001_ATH1_A1-WILLA-CON GSE6181 Assembly of the cell wall pectic matrix.
143.8 99.9 GSM218594 Whole roots 3.5hr KNO3 treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
142.2 99.9 GSM184492 Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
140.0 99.9 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
135.9 99.9 GSM131322 AtGen_6-3422_Saltstress-Roots-6.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
126.5 99.9 GSM184491 Epidermis&Cortex root cells 2hr continuous KNO3 treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
113.5 99.9 GSM184526 Stele root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
105.3 99.9 GSM131318 AtGen_6-3322_Saltstress-Roots-3.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.07 3e-5 50 At1g66550 842973 WRKY67 member of WRKY Transcription Factor; Group III C.G. S.X.
0.16 1e-4 48 At5g01900 831826 WRKY62 member of WRKY Transcription Factor; Group III C.G. S.X.
0.02 2e-3 44 At1g69810 843317 WRKY36 member of WRKY Transcription Factor; Group II-b C.G. S.X.
0.02 3e-2 40 At2g30250 817575 WRKY25 member of WRKY Transcription Factor; Group I. Located in nucleus. Involved in response to various abiotic stresses - especially salt stress. C.G. S.X.
0.01 1e-1 38 At5g45050 834536 TTR1 Encodes a member of WRKY Transcription Factor (Group II-e) that confers resistance to tobacco ringspot nepovirus. C.G. S.X.
0.02 1e-1 38 At4g18170 827542 WRKY28 member of WRKY Transcription Factor; Group II-c C.G. S.X.
0.03 4e-1 36 At5g57520 835856 ZFP2 (ZINC FINGER PROTEIN 2) Encodes a zinc finger protein containing only a single zinc finger. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 6e-1 36 Glycine max GmaAffx.6438.7.S1_at BE800712 WRKY19 (WRKY19) - 2e-7 At2g37260 TTG2 (TRANSPARENT TESTA GLABRA 2) C.G. S.X.
0.02 5e-2 38 Hordeum vulgare Contig1813_s_at Contig1813 - - 1e-121 At5g55190 RAN3 (RAN GTPASE 3) C.G. S.X.
0.02 8e-1 36 Oryza sativa Os06g0218800 AK104975.1 - - 2e-3 At2g27290 unknown protein C.G. S.X.
0.04 2e-1 38 Populus trichocarpa PtpAffx.214321.1.S1_at pmrna27853 hypothetical protein - 2e+0 At4g31310 avirulence-responsive protein-related / avirulence induced gene (AIG) protein-related C.G. S.X.
0.03 7e+0 32 Triticum aestivum Ta.500.1.A1_at CA699065 - - 2e-4 At2g20613 unknown protein C.G. S.X.
0.02 2e+0 32 Vitis vinifera 1620469_at CF209780 - - 4e-3 At1g21120 O-methyltransferase, putative C.G. S.X.
0.03 3e+0 32 Zea mays Zm.19052.2.A1_x_at CB331536 hypothetical protein LOC100216657 - 4e+0 At4g13440 calcium-binding EF hand family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009863 A series of molecular signals mediated by salicylic acid.
X GO:0042742 Reactions triggered in response to the presence of a bacterium that act to protect the cell or organism.
C GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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