CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g22530

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.14 6.8 At5g22530 832314 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PO S.X. H.G.
0.40 50.8 At5g52670 835344 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;P S.X. H.G.
0.40 50.8 At5g52680 835345 heavy-metal-associated domain-containing protein F:metal ion binding;P:metal ion transport;C:cellular_component unknown;BPOMFV S.X. H.G.
0.10 3.4 At5g64890 836612 PROPEP2 (Elicitor peptide 2 precursor) F:molecular_function unknown;P:response to jasmonic acid stimulus, defense response, incompatible interaction, response to salicylic acid stimulus;C:cellular_component unknown;P S.X. H.G.
0.05 1.1 At5g28610 832960 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVB S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
221.5 100.0 GSM134457 St.Clair_1-82_294_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep1_ATH1 GSE5758 Expression Level Polymorphism Project (ELP) - Mt-0
158.4 99.9 GSM184519 Pericycle root cells 2hr continuous KNO3 and MSX treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
127.5 99.9 GSM131321 AtGen_6-3421_Saltstress-Roots-6.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
124.7 99.9 GSM226540 L10SB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
102.7 99.9 GSM218586 Pericycle root cells 2hr continuous KNO3 and MSX and Gln treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
91.7 99.9 GSM131318 AtGen_6-3322_Saltstress-Roots-3.0h_Rep2 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
89.8 99.9 GSM134459 St.Clair_1-84_379_Mt-0_0.30mM-SA-in-0.02%-silwet_Rep3_ATH1 GSE5758 Expression Level Polymorphism Project (ELP) - Mt-0
87.8 99.9 GSM131395 AtGen_6-7311_UV-Bstress-Shoots-3.0h_Rep1 GSE5626 AtGenExpress: Stress Treatments (UV-B stress)
86.4 99.9 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
83.8 99.9 GSM131317 AtGen_6-3321_Saltstress-Roots-3.0h_Rep1 GSE5623 AtGenExpress: Stress Treatments (Salt stress)
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.44 2e-17 89 At5g22520 832313 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.10 2e-10 65 At5g22545 832316 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.02 1e-2 40 At5g41020 834104 myb family transcription factor F:transcription factor activity, DNA binding;P:unknown;C:unknown;MOFBPVA C.G. S.X.
0.01 1e-2 40 At4g33390 829476 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.03 5e-2 38 At3g22425 821812 IGPD Encodes imidazoleglycerolphosphate dehydratase. C.G. S.X.
0.02 2e-1 36 At3g48900 824051 DNA binding / catalytic/ chromatin binding / nuclease F:chromatin binding, DNA binding, catalytic activity, nuclease activity;P:DNA repair, chromatin assembly or disassembly;C:chromatin, endomembrane system, nucleus;MFOAPV C.G. S.X.
0.01 2e-1 36 At2g17580 816265 polynucleotide adenylyltransferase family protein F:RNA binding, nucleotidyltransferase activity;P:RNA processing;C:chloroplast;BOMFPV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 1e-3 44 Glycine max HgAffx.13089.1.S1_x_at CB374893 - - 1e+0 At2g38255 unknown protein C.G. S.X.
0.04 2e+0 32 Hordeum vulgare Contig9802_s_at Contig9802 - - 6e-7 At3g59800 unknown protein C.G. S.X.
0.05 4e-1 36 Oryza sativa OsAffx.26661.1.S1_at - - - 0 C.G. S.X.
0.05 1e-3 44 Populus trichocarpa PtpAffx.45565.1.S1_at BI126193 - - 1e-3 At5g22530 unknown protein C.G. S.X.
0.05 8e-1 34 Triticum aestivum TaAffx.72129.1.S1_at CA688265 - - 6e-1 At5g22520 unknown protein C.G. S.X.
0.05 9e-1 32 Vitis vinifera 1620992_at CF608881 hypothetical protein LOC100261829 - 3e-1 At5g51650 unknown protein C.G. S.X.
0.04 1e+0 32 Zea mays ZmAffx.170.1.S1_at AI668224 - - 8e-1 At1g13245 RTFL17 (ROTUNDIFOLIA LIKE 17) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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