CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g22430

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g22430 832304 unknown protein F:molecular_function unknown;P:biological_process unknown;C:anchored to membrane;P S.X. H.G.
1.00 100.0 At1g58430 842212 RXF26 Encodes an anther-specific proline-rich protein. S.X. H.G.
1.00 100.0 At2g20870 816620 cell wall protein precursor, putative F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BPMF S.X. H.G.
1.00 100.0 At3g10570 820222 CYP77A6 member of CYP77A S.X. H.G.
1.00 100.0 At5g33370 833315 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM S.X. H.G.
0.92 96.0 At1g63710 842675 CYP86A7 Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at highest level in mature stems and flowers. S.X. H.G.
0.86 93.1 At5g55720 835666 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
68.3 99.9 E-MEXP-1592-raw-cel-1617526840
62.2 99.8 E-MEXP-1592-raw-cel-1617526832
62.0 99.8 GSM131590 ATGE_35_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
61.5 99.8 GSM131588 ATGE_35_A GSE5632 AtGenExpress: Developmental series (flowers and pollen)
58.3 99.8 GSM131589 ATGE_35_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
54.2 99.8 E-MEXP-1592-raw-cel-1617526904
50.8 99.8 E-MEXP-1592-raw-cel-1617526992
50.0 99.8 E-MEXP-1592-raw-cel-1617526928
49.0 99.8 GSM106934 opr3_OPDA_8 hrs_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
48.8 99.8 GSM232883 Mut.1-5.240 GSE9201 Identification of genes responding to the activity of the Arabidopsis cytochrome P450 KLUH/CYP78A5
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 3e-1 36 At5g03790 831723 HB51 Encodes a homeodomain leucine zipper class I (HD-Zip I) meristem identity regulator that acts together with LFY to induce CAL expression. It binds to the CAL promoter proximal CAATNATTG element. LMI1 acts primarily downstream of LFY in meristem identity regulation. The interaction between LFY, LMI1 and CAL resembles a feed-forward loop transcriptional network motif. The gene also had additional LFY-independent roles in leaf morphogenesis and bract formation. C.G. S.X.
0.01 3e-1 36 At5g59270 836045 lectin protein kinase family protein F:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA C.G. S.X.
0.02 3e-1 36 At1g19750 838564 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MFBOPA C.G. S.X.
0.01 1e+0 34 At4g24580 828560 REN1 (ROP1 ENHANCER 1) Encodes a Rho GTPase-activating protein that interacts with ROP1 (a Rho GTPase) and regulates pollen tube development. This protein can be observed at the apical tip of growing pollen tubes and on endocytic vesicles traveling to this region of the pollen tube. C.G. S.X.
0.03 1e+0 34 At2g34260 817987 transducin family protein / WD-40 repeat family protein F:nucleotide binding;P:unknown;C:CUL4 RING ubiquitin ligase complex, heterotrimeric G-protein complex;MBFOPA C.G. S.X.
0.01 1e+0 34 At1g76720 844006 GTP binding / GTPase/ translation initiation factor F:GTP binding, GTPase activity, translation initiation factor activity;P:translational initiation;C:cellular_component unknown;MOBFPAV C.G. S.X.
0.01 4e+0 32 At5g48390 834894 ATZIP4 Defective in meiotic chromosome segregation C.G. S.X.
0.01 4e+0 32 At5g52400 835316 CYP715A1 member of CYP715A C.G. S.X.
0.02 4e+0 32 At5g26090 832678 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.04 9e-2 38 Glycine max PsAffx.CL18Contig1_at PsAffx.CL18Contig1 - - 6e-2 At5g22430 unknown protein C.G. S.X.
0.03 8e+0 30 Hordeum vulgare Contig16528_at Contig16528 - - 3e-1 At1g65295 unknown protein C.G. S.X.
0.04 5e-1 36 Oryza sativa OsAffx.31534.1.S1_at - - - 0 C.G. S.X.
0.05 6e+0 32 Populus trichocarpa PtpAffx.77708.1.A1_at CK097133 - - 2e+0 At5g22430 unknown protein C.G. S.X.
0.04 7e-2 38 Triticum aestivum TaAffx.85018.1.S1_at CA623086 - - 5e-2 At5g22430 unknown protein C.G. S.X.
0.03 3e-1 34 Vitis vinifera 1620362_s_at CB970484 hypothetical protein LOC100246461 - 4e+0 At5g57650 eukaryotic translation initiation factor-related C.G. S.X.
0.04 2e+0 32 Zea mays ZmAffx.932.1.A1_at AI795506 - - 3e+0 At5g22430 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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