CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g22310

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g22310 832291 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;MOFBPAV S.X. H.G.
0.46 59.8 At4g10840 826680 kinesin light chain-related F:binding;P:unknown;C:plasma membrane;MBOFAPV S.X. H.G.
0.29 30.3 At5g39340 833930 AHP3 (HISTIDINE-CONTAINING PHOSPHOTRANSMITTER 3) Encodes AHP3, one of the six Arabidopsis thaliana histidine phosphotransfer proteins (AHPs) involved in Histidine (His)-to-Aspartate (Asp) phosphorelay signal transduction. AHPs function as redundant positive regulators of cytokinin signaling. Members of the AHP gene family include: AT3G21510 (AHP1), AT3G29350 (AHP2), AT5G39340 (AHP3), AT3G16360 (AHP4), AT1G03430 (AHP5) and AT1G80100 (AHP6). S.X. H.G.
0.22 17.5 At3g23690 821950 basic helix-loop-helix (bHLH) family protein F:transcription factor activity, DNA binding;P:regulation of transcription;C:nucleus;PFMOB S.X. H.G.
0.08 2.3 At5g64330 836554 NPH3 (NON-PHOTOTROPIC HYPOCOTYL 3) Involved in blue light response signaling pathway; interacts with the blue light photoreceptor NPH1.Null mutations abolish phototrophic responses of etiolated seedlings to low fluence blue light. Protein contains multiple protein-protein interaction domains. S.X. H.G.
0.07 1.9 At3g57790 824949 glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein F:polygalacturonase activity;P:carbohydrate metabolic process;C:plasma membrane;PBFOMAV S.X. H.G.
0.05 1.1 At3g09300 820086 ORP3B (OSBP(OXYSTEROL BINDING PROTEIN)-RELATED PROTEIN 3B) F:oxysterol binding;P:steroid metabolic process;C:unknown;MFOP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
198.8 100.0 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
102.3 99.9 GSM184895 Arabidopsis, root cells, cortex, standard conditions, replicate 1 GSE7641 Expression analysis of root cell-types after treatment with salt
64.2 99.8 GSM184516 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
53.5 99.8 GSM184835 Arabidopsis, root, longitudinal zone 3, standard conditions, replicate 5 GSE7639 Expression analysis of root developmental zones after treatment with salt
50.2 99.8 GSM184504 Pericycle root cells 2hr KCl control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
48.7 99.8 GSM184517 Pericycle root cells 2hr continuous KCl and MSX control treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
46.4 99.8 GSM184507 Pericycle root cells 2hr transitory KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
43.1 99.8 GSM184510 Pericycle root cells 2hr continuous KNO3 treated, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
40.3 99.8 GSM184487 Epidermis&Cortex root cells 2hr KCl control treated, biological rep3 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
35.6 99.7 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.03 2e-4 48 At1g64690 842777 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
0.02 3e-3 44 At5g58280 835940 transcriptional factor B3 family protein F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:unknown;P C.G. S.X.
0.01 3e-3 44 At4g16630 827364 DEAD/DEAH box helicase, putative (RH28) F:helicase activity, ATP binding, ATP-dependent helicase activity, nucleic acid binding;P:unknown;C:cellular_component unknown;MBOFPVA C.G. S.X.
0.02 3e-3 44 At3g51880 824351 HMGB1 (HIGH MOBILITY GROUP B 1) Encodes a protein belonging to the subgroup of HMGB (high mobility group B) proteins that have a distinctive DNA-binding motif, the HMG-box domain. The motif confers non-sequence specific interaction with linear DNA and structure-specific binding to distorted DNA sites. The HMGB proteins are involved in the assembly of nucleoprotein complexes. Can be phosphorylated by CK2alpha. In interphase cells, HMGB1 is found throughout the nucleus, whereas in mitotic cells it is not chromatin-associated. C.G. S.X.
0.01 3e-3 44 At1g03280 838581 transcription initiation factor IIE (TFIIE) alpha subunit family protein / general transcription factor TFIIE family protein F:RNA polymerase II transcription factor activity, transcription initiation factor activity;P:transcription initiation from RNA polymerase II promoter;C:endomembrane system, transcription factor TFIIE complex;MFOPVBA C.G. S.X.
0.02 1e-2 42 At5g57510 835855 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;P C.G. S.X.
0.02 1e-2 42 At5g39570 833953 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus;PO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-2 42 Glycine max GmaAffx.60973.1.S1_at BU764134 - - 2e-1 At3g44950 glycine-rich protein C.G. S.X.
0.02 3e-1 36 Hordeum vulgare HVSMEc0001C18f2_s_at HVSMEc0001C18f2 - - 7e-1 At2g43018 CPuORF17 (Conserved peptide upstream open reading frame 17) C.G. S.X.
0.02 2e-2 42 Oryza sativa Os05g0165500 AK109061.1 - Conserved hypothetical protein 5e-1 At4g33960 unknown protein C.G. S.X.
0.03 1e-3 46 Populus trichocarpa PtpAffx.203330.1.S1_at pmrna6624 hypothetical protein - 9e-2 At2g13960 myb family transcription factor C.G. S.X.
0.02 5e-2 40 Triticum aestivum TaAffx.51251.1.S1_at CA728679 - - 2e+0 At4g21500 unknown protein C.G. S.X.
0.02 3e-3 42 Vitis vinifera 1621823_at CF214240 hypothetical protein LOC100253216 - 4e+0 At5g66000 unknown protein C.G. S.X.
0.03 5e-3 42 Zea mays ZmAffx.283.1.A1_at AI670414 - - 3e+0 At3g23175 lesion inducing protein-related C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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