Gene omics information

Query gene ID At5g22000
Gene name RHF2A (RING-H2 GROUP F2A)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.6982.9At5g22000832260RHF2A (RING-H2 GROUP F2A)encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. Double mutant analyses with RHF1a suggests that RHF2a may be involved in targetting ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF2a is expressed in all four floral whorls and is present at ~8-fold higher levels than RHF1a in inflorescences by RT-PCR analyses.S.X.H.G.
0.8994.6At4g00720828023ATSK32 (SHAGGY-LIKE PROTEIN KINASE 32)F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cytosol;MOPFBVAS.X.H.G.
0.8290.9At5g06560830544unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOBFVAS.X.H.G.
0.7486.1At1g33250840219fringe-related proteinF:transferase activity, transferring glycosyl groups;P:unknown;C:chloroplast, membrane;MPFOS.X.H.G.
0.7284.8At5g23670832432LCB2Encodes the LCB2 subunit of serine palmitoyltransferase, an enzyme involved in sphingosine biosynthesis. The protein is localized to the endoplasmic reticulum.S.X.H.G.
0.7083.5At1g71410843482protein kinase family proteinF:binding, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:membrane;MOFPBVAS.X.H.G.
0.7083.5At1g15880838158GOS11 (golgi snare 11)Golgi SNARE 11 protein (GOS11)S.X.H.G.
0.6478.9At5g32440833203-F:unknown;P:unknown;C:chloroplast;OPMFBS.X.H.G.
0.6277.3At1g06890837199transporter-relatedF:unknown;P:unknown;C:Golgi apparatus, membrane;PMFOBAS.X.H.G.
0.5673.0At2g43790818982ATMPK6 (ARABIDOPSIS THALIANA MAP KINASE 6)Encodes a MAP kinase induced by pathogens, ethylene biosynthesis, oxidative stress and osmotic stress.Also involved in ovule development. Homozygous mutants in a MPK3 heterozygous background are female sterile due to defects in integument development.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
36.899.7GSM128662Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1GSE5520Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
33.999.7E-MEXP-1138-raw-cel-1432772522
30.099.7GSM131637ATGE_73_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
28.999.7GSM131638ATGE_73_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
27.699.7E-MEXP-1138-raw-cel-1432772586
27.499.7E-MEXP-1138-raw-cel-1432772650
25.799.7E-MEXP-1138-raw-cel-1432772554
23.799.6GSM131636ATGE_73_AGSE5632AtGenExpress: Developmental series (flowers and pollen)
23.499.6E-MEXP-1138-raw-cel-1432772938
22.999.6E-MEXP-1138-raw-cel-1432772618
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.024e-240At5g01980831911zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFVBC.G.S.X.
0.021e-138At4g24240828525WRKY7Encodes a Ca-dependent calmodulin binding protein. Sequence similarity to the WRKY transcription factor gene family.C.G.S.X.
0.011e-138At4g17380827450MSH4 (MUTS HOMOLOG 4)Encodes the Arabidopsis homolog of MSH4, a meiosis-specific member of the MutS-homolog family of genes. It is expressed only in floral tissues and only during early meiotic prophase I, preceding the synapsis of homologous chromosomes. It is involved in the early steps of recombination.C.G.S.X.
0.021e-138At4g14220827062RHF1A (RING-H2 GROUP F1A)encodes a RING-type E3 ubiquitin ligase implicated in gametogenesis. RHF1a can interact with the cell cycle inhibitor ICK4/KRP6 in vitro. It apppears to target ICK4KRP6 for degradation following meiosis in order to allow the mitoses associated with megagametogenesis and microgametogenesis to occur. RHF1a is expressed in the carpels throughout floral development. It is expressed in various tissues of the anthers during the early stages of anther development but not in stage 12 flowers and beyond.C.G.S.X.
0.011e-138At3g24900822088AtRLP39 (Receptor Like Protein 39)F:protein binding;P:signal transduction, defense response;C:endomembrane system;PMOBFAVC.G.S.X.
0.011e-138At1g01590837194FRO1 (FERRIC REDUCTION OXIDASE 1)Encodes a ferric-chelate reductase that is expressed at extremely low levels in Fe deficiency-induced seedlings.C.G.S.X.
0.026e-136At4g11660826771AT-HSFB2Bmember of Heat Stress Transcription Factor (Hsf) familyC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.197e-29129Glycine maxGma.5939.2.S1_atBU760891--2e-21At5g22000RHF2A (RING-H2 GROUP F2A)C.G.S.X.
0.114e-25115Hordeum vulgareContig8100_atContig8100--1e-24At5g22000RHF2A (RING-H2 GROUP F2A)C.G.S.X.
0.112e-1791Oryza sativaOs11g0572500AY323129.1--2e-17At5g22000RHF2A (RING-H2 GROUP F2A)C.G.S.X.
0.353e-22107Populus trichocarpaPtpAffx.205097.1.S1_atpmrna10098--9e-23At5g22000RHF2A (RING-H2 GROUP F2A)C.G.S.X.
0.121e-29131Triticum aestivumTa.4382.1.S1_atCK158657RING-H2 finger protein-2e-29At5g22000RHF2A (RING-H2 GROUP F2A)C.G.S.X.
0.037e-134Vitis vinifera1622507_atCB975105--6e-20At1g51410cinnamyl-alcohol dehydrogenase, putative (CAD)C.G.S.X.
0.042e-136Zea maysZm.15485.1.S1_atCD446373--8e-1At5g22000RHF2A (RING-H2 GROUP F2A)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009561The process whose specific outcome is the progression of the embryo sac over time, from its formation as the megaspore to the mature structure. The process begins when three of the four haploid megaspores disintegrate, and the fourth undergoes mitosis giving rise to a binucleate syncytial embryo sac. The two haploid nuclei migrate to the opposite poles of the embryo sac and then undergo two rounds of mitosis generating four haploid nuclei at each pole. One nucleus from each set of four migrates to the center of the cell. Cellularization occurs, resulting in an eight-nucleate seven-celled structure. This structure contains two synergid cells and an egg cell at the micropylar end, and three antipodal cells at the other end. A binucleate endosperm mother cell is formed at the center.
XGO:0051603The hydrolysis of a peptide bond or bonds within a protein during the chemical reactions and pathways resulting in the breakdown of a protein by individual cells.
XGO:0051726Any process that modulates the rate or extent of progression through the cell cycle.
XGO:0055046The process whose specific outcome is the progression of the pollen grain over time, from its formation as the microspore to the mature structure.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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