CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g21170

Gene name 5'-AMP-activated protein kinase beta-2 subunit, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.57 73.8 At5g21170 832243 5'-AMP-activated protein kinase beta-2 subunit, putative F:AMP-activated protein kinase activity;P:N-terminal protein myristoylation;C:chloroplast;MFPOB S.X. H.G.
1.00 100.0 At5g20250 832147 DIN10 (DARK INDUCIBLE 10) encodes a member of glycosyl hydrolase family 36. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell. S.X. H.G.
0.80 89.8 At5g19120 832032 aspartic-type endopeptidase F:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PF S.X. H.G.
0.75 86.9 At3g15450 820784 unknown protein F:molecular_function unknown;P:unknown;C:unknown;PBOMF S.X. H.G.
0.75 86.9 At5g22920 832356 zinc finger (C3HC4-type RING finger) family protein F:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFBA S.X. H.G.
0.57 73.8 At5g49360 834996 BXL1 (BETA-XYLOSIDASE 1) Encodes a bifunctional {beta}-D-xylosidase/{alpha}-L-arabinofuranosidase required for pectic arabinan modification. Located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
42.8 99.8 GSM253166 48h into an extended nightC GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
40.9 99.8 GSM253164 24h into an extended nightC GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
31.7 99.7 GSM253160 6h into an extended night GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
30.7 99.7 GSM253198 RGA-GR-DEX-REP3 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
30.4 99.7 GSM253161 8h into an extended nightA GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
30.1 99.7 GSM253163 24h into an extended nightB GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
29.3 99.7 GSM205185 protoplast_KIN10_rep2 GSE8257 Identification of KIN10-target genes in Arabidopsis mesophyll cells
28.8 99.7 E-MEXP-1299-raw-cel-1519902871
28.4 99.7 GSM253196 RGA-GR-DEX-REP2 GSE10019 Identification of RGA downstream genes by using steroid-inducible system
27.6 99.7 GSM253165 48h into an extended nightB GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e+0 34 At5g45520 834588 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPVA C.G. S.X.
0.02 2e+0 34 At4g13270 826957 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
0.03 2e+0 34 At4g16360 827331 AMP-activated protein kinase F:AMP-activated protein kinase activity;P:N-terminal protein myristoylation;C:chloroplast;MFPOB C.G. S.X.
0.02 2e+0 34 At3g20310 821575 ERF7 (ETHYLINE RESPONSE FACTOR 7) Encodes a member of the ERF (ethylene response factor) subfamily B-1 of ERF/AP2 transcription factor family (ATERF-7). The protein contains one AP2 domain. Phosphorylated by PKS3 in vitro. Involved in ABA-mediated responses. Acts as a repressor of GCC box�mediated transcription together with AtSin3 and HDA19. C.G. S.X.
0.02 2e+0 34 At3g55370 824703 OBP3 (OBF-BINDING PROTEIN 3) Encodes a nuclear localized Dof domain containing transcription factor expressed primarily in roots. Responsive to salicylic acid. Transgenic overexpressors have yellow leaves and short, defective roots. C.G. S.X.
0.02 2e+0 34 At3g50660 824229 DWF4 (DWARF 4) Encodes a 22α hydroxylase whose reaction is a rate-limiting step in brassinosteroid biosynthetic pathway. The protein is a member of CYP90B gene family. CLM is an epi-allele with small, compressed rosette, reduced internode length, and reduced fertility, appears in selfed ddm mutant plants possibly due to loss of cytosine methylation. Transcripts accumulate in actively growing tissues, and GUS expression is negatively regulated by brassinosteroids. Localized in the endoplasmic reticulum. The in vitro expressed protein can perform the C-22 hydroxylation of a variety of C27-, C28- and C29-sterols. Cholesterol was the best substrate, followed by campesterol. Sitosterol was a poor substrate. C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.11 1e-5 52 Glycine max Gma.1444.1.S1_at AW350114 - - 1e-5 At5g21170 5'-AMP-activated protein kinase beta-2 subunit, putative C.G. S.X.
0.06 6e-8 57 Hordeum vulgare Contig8485_at Contig8485 - - 2e-7 At5g21170 5'-AMP-activated protein kinase beta-2 subunit, putative C.G. S.X.
0.04 9e-4 46 Oryza sativa OsAffx.15055.1.S1_at - - - 0 C.G. S.X.
0.22 7e-13 75 Populus trichocarpa Ptp.7088.1.S1_at CV227578 hypothetical protein - 6e-13 At5g21170 5'-AMP-activated protein kinase beta-2 subunit, putative C.G. S.X.
0.08 3e-5 50 Triticum aestivum Ta.3840.2.S1_at CA640730 - - 2e-5 At5g21170 5'-AMP-activated protein kinase beta-2 subunit, putative C.G. S.X.
0.06 5e-4 44 Vitis vinifera 1610302_at CF215148 hypothetical protein LOC100266800 - 1e-3 At5g21170 5'-AMP-activated protein kinase beta-2 subunit, putative C.G. S.X.
0.04 5e-2 38 Zea mays Zm.13451.1.A1_at AY109218.1 SNF1-related protein kinase regulatory subunit beta-1 - 2e-1 At5g21170 5'-AMP-activated protein kinase beta-2 subunit, putative C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0043562 A change in state or activity of a cell (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus reflecting the presence, absence, or concentration of inorganic nitrogen.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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