CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g21110

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g21110 832236 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.60 75.7 At1g55790 842028 ATP binding / nucleotide binding / phenylalanine-tRNA ligase F:phenylalanine-tRNA ligase activity, nucleotide binding, ATP binding;P:phenylalanyl-tRNA aminoacylation, translation;C:cytoplasm;PFMOB S.X. H.G.
0.58 73.8 At5g16430 831504 - F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.57 73.8 At4g39756 830133 kelch repeat-containing F-box family protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOAV S.X. H.G.
0.56 73.0 At2g22070 816742 pentatricopeptide (PPR) repeat-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFB S.X. H.G.
0.56 73.0 At3g55300 3769718 transposable element gene F:unknown;P:unknown;C:unknown S.X. H.G.
0.56 73.0 At1g54470 841889 RPP27 (resistance to Peronospora parasitica 27) Encodes a Cf-like gene in Arabidopsis that confers downy mildew resistance to several isolates of Peronospora parasitica. S.X. H.G.
0.55 70.6 At5g25960 832665 unknown protein F:unknown;P:biological_process unknown;C:endomembrane system;PFB S.X. H.G.
0.55 70.6 At1g65120 842819 ubiquitin carboxyl-terminal hydrolase-related F:ubiquitin thiolesterase activity, zinc ion binding;P:ubiquitin-dependent protein catabolic process;C:intracellular;OPMFBV S.X. H.G.
0.55 70.6 At3g04410 819596 transcription factor F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;P S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
403.7 100.0 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
366.1 100.0 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
351.4 100.0 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
340.0 100.0 GSM143309 Tsu_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
336.6 100.0 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
309.0 100.0 GSM143298 Low_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
296.3 100.0 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
294.9 100.0 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
293.8 100.0 GSM143310 Tsu_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
275.8 100.0 GSM253645 High_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.04 1e-1 36 At2g21990 816735 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P C.G. S.X.
0.01 5e-1 34 At2g46920 819306 POL (poltergeist) Pol mutations are recessive, partial suppressors of meristem defects in strong clv1 and clv3 mutants, and nearly complete suppressors of weak clv1 mutants. Single mutants appear normal. Acts downstream of the CLV signaling pathway in meristem development and is required together with PLL1 for stem-cell maintenance through the regulation of WUS. C.G. S.X.
0.01 2e+0 32 At5g55300 835623 TOP1ALPHA (DNA TOPOISOMERASE I ALPHA) Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition. C.G. S.X.
0.02 2e+0 32 At4g37590 829914 NPY5 (NAKED PINS IN YUC MUTANTS 5) A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis. C.G. S.X.
0.01 2e+0 32 At3g47060 823859 ftsh7 (FtsH protease 7) encodes an FtsH protease that is localized to the chloroplast C.G. S.X.
0.02 2e+0 32 At3g20730 821621 pentatricopeptide (PPR) repeat-containing protein F:binding;P:biological_process unknown;C:endomembrane system;POMFB C.G. S.X.
0.01 2e+0 32 At3g56410 824808 unknown protein F:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPVA C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 7e-1 34 Glycine max Gma.5642.1.S1_at AW278080 - - 8e-1 At5g21110 unknown protein C.G. S.X.
0.07 1e+0 32 Hordeum vulgare rbaal31m19_s_at rbaal31m19 - - 2e+0 At5g21110 unknown protein C.G. S.X.
0.03 4e+0 32 Oryza sativa Os11g0632100 9639.m03805 - - 5e+0 At5g21110 unknown protein C.G. S.X.
0.05 3e+0 32 Populus trichocarpa PtpAffx.13688.2.S1_a_at CV244999 hypothetical protein - 4e+0 At5g21110 unknown protein C.G. S.X.
0.08 9e+0 30 Triticum aestivum TaAffx.26013.1.S1_at CA693156 - - 3e-1 At5g65320 basic helix-loop-helix (bHLH) family protein C.G. S.X.
0.03 1e+1 28 Vitis vinifera 1620921_at BQ797526 hypothetical protein LOC100257627 - 2e-8 At5g67290 FAD-dependent oxidoreductase family protein C.G. S.X.
0.06 1e+1 28 Zea mays ZmAffx.1481.1.S1_at 40794996-108 - - 2e-1 At3g62050 - C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage