Gene omics information

Query gene ID At5g21110
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g21110832236unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.6075.7At1g55790842028ATP binding / nucleotide binding / phenylalanine-tRNA ligaseF:phenylalanine-tRNA ligase activity, nucleotide binding, ATP binding;P:phenylalanyl-tRNA aminoacylation, translation;C:cytoplasm;PFMOBS.X.H.G.
0.5873.8At5g16430831504-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.5773.8At4g39756830133kelch repeat-containing F-box family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPBOAVS.X.H.G.
0.5673.0At2g22070816742pentatricopeptide (PPR) repeat-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POMFBS.X.H.G.
0.5673.0At3g553003769718transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.5673.0At1g54470841889RPP27 (resistance to Peronospora parasitica 27)Encodes a Cf-like gene in Arabidopsis that confers downy mildew resistance to several isolates of Peronospora parasitica.S.X.H.G.
0.5570.6At5g25960832665unknown proteinF:unknown;P:biological_process unknown;C:endomembrane system;PFBS.X.H.G.
0.5570.6At1g65120842819ubiquitin carboxyl-terminal hydrolase-relatedF:ubiquitin thiolesterase activity, zinc ion binding;P:ubiquitin-dependent protein catabolic process;C:intracellular;OPMFBVS.X.H.G.
0.5570.6At3g04410819596transcription factorF:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;PS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
403.7100.0GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
366.1100.0GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
351.4100.0GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
340.0100.0GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
336.6100.0GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
309.0100.0GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
296.3100.0GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
294.9100.0GSM143307Low_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
293.8100.0GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
275.8100.0GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.041e-136At2g21990816735unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PC.G.S.X.
0.015e-134At2g46920819306POL (poltergeist)Pol mutations are recessive, partial suppressors of meristem defects in strong clv1 and clv3 mutants, and nearly complete suppressors of weak clv1 mutants. Single mutants appear normal. Acts downstream of the CLV signaling pathway in meristem development and is required together with PLL1 for stem-cell maintenance through the regulation of WUS.C.G.S.X.
0.012e+032At5g55300835623TOP1ALPHA (DNA TOPOISOMERASE I ALPHA)Encodes a type-I DNA topoisomerase I. Disruptions in this gene affect phyllotaxis and plant architecture suggesting that the gene plays a critical role in the maintenance of a regular pattern of organ initiation. Isolated as a protein oxidized during seed germination; proteomics approach revealed differences in de novo synthesis levels of this protein in condition with vs. without salicylic acid in the period from 0 to 40 hrs. following seed imbibition.C.G.S.X.
0.022e+032At4g37590829914NPY5 (NAKED PINS IN YUC MUTANTS 5)A member of the NPY gene family (NPY1/AT4G31820, NPY2/AT2G14820, NPY3/AT5G67440, NPY4/AT2G23050, NPY5/AT4G37590). Involved in auxin-mediated organogenesis.C.G.S.X.
0.012e+032At3g47060823859ftsh7 (FtsH protease 7)encodes an FtsH protease that is localized to the chloroplastC.G.S.X.
0.022e+032At3g20730821621pentatricopeptide (PPR) repeat-containing proteinF:binding;P:biological_process unknown;C:endomembrane system;POMFBC.G.S.X.
0.012e+032At3g56410824808unknown proteinF:molecular_function unknown;P:biological_process unknown;C:unknown;OMBFPVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.057e-134Glycine maxGma.5642.1.S1_atAW278080--8e-1At5g21110unknown proteinC.G.S.X.
0.071e+032Hordeum vulgarerbaal31m19_s_atrbaal31m19--2e+0At5g21110unknown proteinC.G.S.X.
0.034e+032Oryza sativaOs11g06321009639.m03805--5e+0At5g21110unknown proteinC.G.S.X.
0.053e+032Populus trichocarpaPtpAffx.13688.2.S1_a_atCV244999hypothetical protein-4e+0At5g21110unknown proteinC.G.S.X.
0.089e+030Triticum aestivumTaAffx.26013.1.S1_atCA693156--3e-1At5g65320basic helix-loop-helix (bHLH) family proteinC.G.S.X.
0.031e+128Vitis vinifera1620921_atBQ797526hypothetical protein LOC100257627-2e-8At5g67290FAD-dependent oxidoreductase family proteinC.G.S.X.
0.061e+128Zea maysZmAffx.1481.1.S1_at40794996-108--2e-1At3g62050-C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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