CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g20950

Gene name glycosyl hydrolase family 3 protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g20950 832220 glycosyl hydrolase family 3 protein F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cell wall, membrane, plant-type cell wall;BOFPAM S.X. H.G.
0.53 68.6 At1g30580 839938 GTP binding F:GTP binding;P:response to cadmium ion;C:intracellular;OBMFAP S.X. H.G.
0.51 66.3 At3g51010 824265 unknown protein F:molecular_function unknown;P:biological_process unknown;C:mitochondrion, plastid;P S.X. H.G.
0.50 65.3 At1g18080 838388 ATARCA Encodes the Arabidopsis thaliana homolog of the tobacco WD-40 repeat ArcA gene. S.X. H.G.
0.47 61.2 At3g01280 820914 VDAC1 (VOLTAGE DEPENDENT ANION CHANNEL 1) Encodes a voltage-dependent anion channel (VDAC: AT3G01280/VDAC1, AT5G67500/VDAC2, AT5G15090/VDAC3, AT5G57490/VDAC4, AT5G15090/VDAC5). VDACs are reported to be porin-type, beta-barrel diffusion pores. They are prominently localized in the outer mitochondrial membrane and are involved in metabolite exchange between the organelle and the cytosol. S.X. H.G.
0.46 59.8 At3g25520 822138 ATL5 (A. THALIANA RIBOSOMAL PROTEIN L5) Encodes ribosomal protein L5 that binds to 5S ribosomal RNA and in involved in its export from the nucleus to the cytoplasm. Identified in a screen for enhancers of as1. as1/pgy double mutants show defects in leaf vascular patterning and adaxial cell fate. Double mutant analysis indicates pgy genes function in the same pathway as REV, KAN1 and KAN2. S.X. H.G.
0.46 59.8 At2g23350 816867 PAB4 (POLY(A) BINDING PROTEIN 4) polyadenylate-binding protein, putative / PABP, putative.Member of the Class II family of PABP proteins. Highly and ubiquitously expressed. S.X. H.G.
0.46 59.8 At3g03600 821211 RPS2 (RIBOSOMAL PROTEIN S2) Structural component of the mitochondrial ribosome small subunit S.X. H.G.
0.45 58.3 At1g04170 839238 EIF2 GAMMA protein synthesis initiation factor eIF2 gamma S.X. H.G.
0.44 57.2 At5g41970 834202 - F:molecular_function unknown;P:biological_process unknown;C:mitochondrion;MBOFP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.6 99.5 GSM173648 mARF10 rep1 GSE7227 microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
16.9 99.5 E-MEXP-1607-raw-cel-1620685826
15.9 99.5 GSM173628 ARF10 rep2 GSE7227 microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
15.9 99.5 GSM173624 Col-0 rep3 GSE7227 microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
15.4 99.5 GSM173629 ARF10 rep3 GSE7227 microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
15.1 99.4 GSM173651 mARF10 rep3 GSE7227 microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
14.8 99.4 GSM173626 ARF10 rep1 GSE7227 microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
14.8 99.4 GSM299321 Wild Type Germinating Seeds With Solvent Treatment Only Set 1 of 6 GSE11852 Effect of uniconazole on wt and pkl mutant germinating seeds
14.6 99.4 GSM173623 Col-0 rep2 GSE7227 microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
14.5 99.4 GSM173621 Col-0 rep1 GSE7227 microRNA160 resistant AUXIN RESPONSE FACTOR10 (mARF10) germinating seeds
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.57 1e-101 371 At5g20940 832219 glycosyl hydrolase family 3 protein F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:endomembrane system;BOFPAM C.G. S.X.
0.15 4e-46 186 At5g04885 830368 glycosyl hydrolase family 3 protein F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:plasma membrane, anchored to membrane;BOFPAM C.G. S.X.
0.09 3e-10 67 At3g62710 825445 glycosyl hydrolase family 3 protein F:xylan 1,4-beta-xylosidase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:endomembrane system;BOFPAM C.G. S.X.
0.03 2e-4 48 At3g47050 823858 glycosyl hydrolase family 3 protein F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:vacuole;BOFPAM C.G. S.X.
0.04 2e-4 48 At3g47040 823857 glycosyl hydrolase family 3 protein F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cellular_component unknown;BOFPAM C.G. S.X.
0.07 2e-4 48 At3g47010 823854 hydrolase, hydrolyzing O-glycosyl compounds F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cellular_component unknown;BOFPAM C.G. S.X.
0.06 4e-3 44 At3g47000 823853 glycosyl hydrolase family 3 protein F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process;C:cellular_component unknown;BOFPAM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 4e-44 180 Glycine max Gma.16696.1.S1_at BI971040 beta-D-glucan exohydrolase - 2e-44 At5g20950 glycosyl hydrolase family 3 protein C.G. S.X.
0.17 2e-25 117 Hordeum vulgare Contig3391_at Contig3391 - - 1e-28 At5g20940 glycosyl hydrolase family 3 protein C.G. S.X.
0.16 3e-8 61 Oryza sativa Os03g0749300 AK065044.1 - Exoglucanase precursor 3e-8 At5g20950 glycosyl hydrolase family 3 protein C.G. S.X.
0.27 1e-22 109 Populus trichocarpa PtpAffx.53076.1.S1_at CX658030 hypothetical protein - 7e-23 At5g20950 glycosyl hydrolase family 3 protein C.G. S.X.
0.14 2e-17 91 Triticum aestivum Ta.9316.1.S1_x_at BJ237563 beta-D-glucan exohydrolase - 4e-19 At5g20940 glycosyl hydrolase family 3 protein C.G. S.X.
0.17 2e-8 59 Vitis vinifera 1611747_at CF608890 hypothetical protein LOC100246224 - 3e-8 At5g20950 glycosyl hydrolase family 3 protein C.G. S.X.
0.14 2e-27 123 Zea mays Zm.6303.1.S1_at AF064707.1 - - 8e-27 At5g20950 glycosyl hydrolase family 3 protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0005975 The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00412 Glycoside Hydrolase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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