Gene omics information

Query gene ID At5g20860
Gene name pectinesterase family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5267.4At5g20860832209pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMS.X.H.G.
0.7586.9At1g25410839127ATIPT6AB061404 Arabidopsis thaliana AtIPT6 mRNA for cytokinin synthase, complete cdsS.X.H.G.
0.7184.2At5g51490835223pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOMS.X.H.G.
0.6478.9At1g18100838390E12A11E12A11 protein (E12A11)S.X.H.G.
0.5873.8At2g25940817135ALPHA-VPE (alpha-vacuolar processing enzyme)Encodes a vacuolar processing enzyme belonging to a novel group of cysteine proteinases that is expressed in vegetative organs and is upregulated in association with various types of cell death and under stressed conditions.S.X.H.G.
0.5873.8At3g04200819575germin-like protein, putativeF:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFOS.X.H.G.
0.5773.8At3g25160822107ER lumen protein retaining receptor family proteinF:ER retention sequence binding, receptor activity;P:protein retention in ER lumen, protein transport;C:integral to membrane;MOPFS.X.H.G.
0.5773.8At4g25980828704cationic peroxidase, putativeF:peroxidase activity;P:response to oxidative stress;C:endomembrane system;PFOMS.X.H.G.
0.5570.6At1g65880842900BZO1 (BENZOYLOXYGLUCOSINOLATE 1)Encodes a benzoate-CoA ligase. Involved in the biosynthesis of benzoyloxyglucosinolate in Arabidopsis seeds.S.X.H.G.
0.4761.2At5g07500830642PEI1Encodes an embryo-specific zinc finger transcription factor required for heart-stage embryo formation.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
337.1100.0GSM131698ATGE_81_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
286.3100.0GSM131699ATGE_81_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
271.8100.0GSM131695ATGE_79_BGSE5634AtGenExpress: Developmental series (siliques and seeds)
267.2100.0GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
239.7100.0GSM131697ATGE_81_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
222.0100.0GSM131696ATGE_79_CGSE5634AtGenExpress: Developmental series (siliques and seeds)
217.1100.0GSM131694ATGE_79_AGSE5634AtGenExpress: Developmental series (siliques and seeds)
154.199.9GSM133762Lindsey_1-14_torpedo-root_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
132.899.9GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
128.999.9GSM205364met1-3_leaf_second-selfed generation_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.042e-1687At4g02330828064ATPMEPCRBF:pectinesterase activity;P:response to salt stress;C:endomembrane system, cell wall;PBFAOMC.G.S.X.
0.059e-1685At3g05620819728pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMC.G.S.X.
0.049e-1065At5g04970830379pectinesterase, putativeF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall;MOPBFVAC.G.S.X.
0.035e-859At5g51490835223pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFOMC.G.S.X.
0.031e-552At5g51500835224pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFMOC.G.S.X.
0.035e-550At2g45220819130pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:membrane, plant-type cell wall;PBFOMC.G.S.X.
0.041e-242At3g59010825070pectinesterase family proteinF:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMOC.G.S.X.
0.041e-242At3g10720820241pectinesterase, putativeF:pectinesterase activity;P:cell wall modification;C:cell wall, plant-type cell wall;PBFMC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.041e-656Glycine maxGmaAffx.67621.1.S1_atBF716244--3e-6At4g02330ATPMEPCRBC.G.S.X.
0.029e-238Hordeum vulgareHM06O09r_atHM06O09r--7e+0At5g56368-C.G.S.X.
0.032e-346Oryza sativaOs04g02882669632.m02026--1e-1At1g10140-C.G.S.X.
0.137e-859Populus trichocarpaPtpAffx.75910.1.A1_atCV252708--1e-8At5g20860pectinesterase family proteinC.G.S.X.
0.025e-240Triticum aestivumTa.13899.1.S1_x_atCD490417--2e-2At5g20860pectinesterase family proteinC.G.S.X.
0.041e-344Vitis vinifera1615574_atCB977067hypothetical protein LOC100245304-7e-9At2g45220pectinesterase family proteinC.G.S.X.
0.023e-136Zea maysZmAffx.501.1.S1_atAI691747--8e-1At5g62100ATBAG2 (ARABIDOPSIS THALIANA BCL-2-ASSOCIATED ATHANOGENE 2)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0042545The series of events leading to chemical and structural alterations of an existing cell wall that can result in loosening, increased extensibility or disassembly.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00400Link to KaPPA-View 4Homogalacturonan degradation
00422Link to KaPPA-View 4Carbohydrate esterases
00442Link to KaPPA-View 4Rhamnogalacturonan II degradation



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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