Gene omics information

Query gene ID At5g20850
Gene name ATRAD51
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.5368.6At5g20850832208ATRAD51Encodes a homolog of yeast RAD51. Its mRNA is most abundant in early flower buds and is expressed at high levels in exponentially growing cells in suspension cultures and is induced in response to gamma radiation.S.X.H.G.
0.7586.9At4g02390828049APP (ARABIDOPSIS POLY(ADP-RIBOSE) POLYMERASE)Encodes a DNA dependent nuclear poly (ADP-ribose) polymerase (E.C., thought to be involved in post-translational modification .S.X.H.G.
0.6781.6At5g03780831726TRFL10 (TRF-LIKE 10)Encodes a protein whose sequence is similar to human telomere proteins. This belongs to TRFL family 2, which do not show DNA binding in vitro.S.X.H.G.
0.5065.3At3g07800819971thymidine kinase, putativeF:thymidine kinase activity, ATP binding;P:pyrimidine deoxyribonucleoside interconversion, anaerobic respiration;C:cellular_component unknown;BOVMPAFS.X.H.G.
0.4761.2At1g08260837346TIL1 (TILTED 1)Similar to POL2A, DNA polymerase epsilon catalytic subunit. Essential for Arabidopsis growth. Null homozygotes are embryo lethal, partial loss of function alleles show embryo patterning defects such as root pole displacement. Delayed progression through cell cycle results in embryos with smaller numbers of larger cells.S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
258.1100.0GSM133945Murray_2-1_T0-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
157.099.9GSM133950Murray_2-6_T10-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
155.099.9GSM133947Murray_2-3_T4-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
114.299.9GSM133948Murray_2-4_T6-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
112.499.9GSM133949Murray_2-5_T8-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
110.899.9GSM184556Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2GSE7631Cell-specific nitrogen responses in the Arabidopsis root
110.199.9GSM133952Murray_2-8_T14-APH_Rep1_ATH1GSE5747Genome-wide cell cycle studies
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.015e-136At3g48990824060AMP-dependent synthetase and ligase family proteinF:catalytic activity, AMP binding;P:response to cadmium ion;C:apoplast, chloroplast;BOFMPAVC.G.S.X.
0.015e-136At1g07910837306RNL (RNA LIGASE)Encodes a tRNA ligase that resembles the yeast Trl1 RNA ligase in structure and function but very different in sequence. Like Trl1, AtRNL consists of two domains — an N-terminal ligase component and a C-terminal 5'-kinase/2',3'-cyclic phosphodiesterase (CPD) component— that can function in tRNA splicing in vivo when expressed as separate polypeptides. Requires a 2'-PO4 end for tRNA splicing in vivo.C.G.S.X.
0.022e+034At5g12180831091CPK17member of Calcium Dependent Protein KinaseC.G.S.X.
0.012e+034At5g44530834480subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BOPFAMC.G.S.X.
0.012e+034At4g16050827290unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OMFPBVAC.G.S.X.
0.012e+034At4g00700828031C2 domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPOFC.G.S.X.
0.012e+034At3g24503822042ALDH2C4Arabidopsis thaliana aldehyde dehydrogenase AtALDH1a mRNA. a sinapaldehyde dehydrogenase catalyzes both the oxidation of coniferylaldehyde and sinapaldehyde forming ferulic acid and sinapic acid, respectivelyC.G.S.X.
0.012e+034At3g59410825110protein kinase family proteinF:protein tyrosine kinase activity, protein kinase activity, aminoacyl-tRNA ligase activity, nucleotide binding, ATP binding;P:protein amino acid phosphorylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;MPOFBVAC.G.S.X.
0.022e+034At1g12310837785calmodulin, putativeF:calcium ion binding;P:biological_process unknown;C:plasma membrane, nucleus;MFPOBC.G.S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.072e-138Glycine maxPsAffx.C250000005_atPsAffx.C250000005--1e-1At5g20850ATRAD51C.G.S.X.
0.032e-240Hordeum vulgareContig13091_s_atContig13091--4e+0At1g79170unknown proteinC.G.S.X.
0.491e-74282Oryza sativaOs12g0497300AB080264.1-RAD51 homolog RAD51B7e-75At5g20850ATRAD51C.G.S.X.
0.383e-77289Populus trichocarpaPtpAffx.105133.1.S1_atCV232823--2e-77At5g20850ATRAD51C.G.S.X.
0.362e-1377Triticum aestivumTa.7197.1.A1_atCK152351RAD51A recombination protein-2e-13At5g20850ATRAD51C.G.S.X.
0.026e-134Vitis vinifera1613142_atCD802385--1e+0At5g15930PAM1 (plant adhesion molecule 1)C.G.S.X.
0.488e-32137Zea maysZm.632.1.S1_atAF079429.1recombination protein51 gene b-3e-31At5g20850ATRAD51C.G.S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0006302The repair of double-strand breaks in DNA via homologous and nonhomologous mechanisms to reform a continuous DNA helix.
XGO:0010332A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a gamma radiation stimulus. Gamma radiation is a form of electromagnetic radiation (EMR) or light emission of a specific frequency produced from sub-atomic particle interaction, such as electron-positron annihilation and radioactive decay. Gamma rays are generally characterized as EMR having the highest frequency and energy, and also the shortest wavelength, within the electromagnetic radiation spectrum.
SGO:0006259The chemical reactions and pathways involving DNA, deoxyribonucleic acid, one of the two main types of nucleic acid, consisting of a long, unbranched macromolecule formed from one, or more commonly, two, strands of linked deoxyribonucleotides.
CGO:0006281The process of restoring DNA after damage. Genomes are subject to damage by chemical and physical agents in the environment (e.g. UV and ionizing radiations, chemical mutagens, fungal and bacterial toxins, etc.) and by free radicals or alkylating agents endogenously generated in metabolism. DNA is also damaged because of errors during its replication. A variety of different DNA repair pathways have been reported that include direct reversal, base excision repair, nucleotide excision repair, photoreactivation, bypass, double-strand break repair pathway, and mismatch repair pathway.
NGO:0009314A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of an electromagnetic radiation stimulus. Electromagnetic radiation is a propagating wave in space with electric and magnetic components. These components oscillate at right angles to each other and to the direction of propagation.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

03440Link to KEGG PATHWAYHomologous recombination
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