CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g20690

Gene name ATP binding / kinase/ protein serine/threonine kinase

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g20690 832192 ATP binding / kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA S.X. H.G.
0.64 78.9 At4g26930 828800 MYB97 (myb domain protein 97) Encodes a putative transcription factor (MYB97). S.X. H.G.
0.62 77.3 At1g33770 840268 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation, N-terminal protein myristoylation;C:cellular_component unknown;MPOFBVA S.X. H.G.
0.54 69.5 At4g21326 827882 ATSBT3.12 (SUBTILASE 3.12) F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAM S.X. H.G.
0.53 68.6 At1g74220 843762 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFPBV S.X. H.G.
0.51 66.3 At5g25430 832617 anion exchanger F:anion exchanger activity;P:anion transport;C:integral to membrane, membrane;MFPOBV S.X. H.G.
0.49 63.5 At3g52460 824411 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;PMOFBVA S.X. H.G.
0.48 62.5 At5g35390 833500 leucine-rich repeat transmembrane protein kinase, putative Encodes a member of the receptor-like kinase family of genes. In pollen tubes, it accumulates in the plasma membrane of the apical growing tip through the process of exocytosis. S.X. H.G.
0.47 61.2 At5g17400 831606 ER-ANT1 (ENDOPLASMIC RETICULUM-DENINE NUCLEOTIDE TRANSPORTER 1) This gene is predicted to encode an ER-localized adenine nucleotide transporter with six putative transmembrane helices. It appears to act as a ATP:ADP antiporter when expressed in E.coli plasma membranes. Transcript levels for several ER-localized chaperones (e.g. BIP1/2) and other ATP-requiring ER proteins (e.g. CPK2) are reduced in er-ant1 knock-out lines, suggesting a lack of adequate ATP transport into the ER in these mutants. They also have reduced seed oil and seed protein levels. S.X. H.G.
0.46 59.8 At1g08135 837334 CHX6B (CATION/H+ EXCHANGER 6B) F:monovalent cation:proton antiporter activity;P:cation transport;C:integral to membrane;BPFAO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
249.9 100.0 GSM205435 Col_ leaf_ wildtype_rep02 GSE8279 Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
243.9 100.0 GSM154508 Arabidopsis growing pollen tubes rep2 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
221.4 100.0 GSM154507 Arabidopsis growing pollen tubes rep1 GSE6696 Transcriptome analyses show changes in gene expression to accompany pollen germination and tube growth in Arabidopsis
205.0 100.0 E-MEXP-285-raw-cel-440782725
196.7 100.0 E-MEXP-285-raw-cel-440782791
159.6 99.9 E-MEXP-1138-raw-cel-1432772682
123.6 99.9 GSM131637 ATGE_73_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
117.2 99.9 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
111.2 99.9 E-MEXP-1138-raw-cel-1432772522
110.7 99.9 E-MEXP-1138-raw-cel-1432772586
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.51 2e-144 513 At3g42880 823335 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.02 4e-3 44 At1g47885 841205 leucine-rich repeat family protein F:protein binding;P:signal transduction;C:cellular_component unknown;POB C.G. S.X.
0.01 2e-2 42 At5g12080 831081 MSL10 (MECHANOSENSITIVE CHANNEL OF SMALL CONDUCTANCE-LIKE 10) F:mechanically-gated ion channel activity;P:detection of mechanical stimulus;C:plasma membrane, membrane;BOFAP C.G. S.X.
0.01 2e-2 42 At1g72460 843578 leucine-rich repeat transmembrane protein kinase, putative F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.01 6e-2 40 At5g60530 836174 late embryogenesis abundant protein-related / LEA protein-related F:molecular_function unknown;P:unknown;C:endomembrane system;MOFBPVA C.G. S.X.
0.01 6e-2 40 At3g24520 822047 AT-HSFC1 member of Heat Stress Transcription Factor (Hsf) family C.G. S.X.
0.02 6e-2 40 At3g49330 824095 invertase/pectin methylesterase inhibitor family protein F:enzyme inhibitor activity, pectinesterase inhibitor activity, pectinesterase activity;P:biological_process unknown;C:endomembrane system;P C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 9e-2 40 Glycine max GmaAffx.88559.1.A1_at CD392545 - - 4e-2 At4g00895 ATP synthase delta chain-related C.G. S.X.
0.01 1e-1 38 Hordeum vulgare EBem04_SQ002_C12_at EBem04_SQ002_C12 - - 3e-1 At1g79800 plastocyanin-like domain-containing protein C.G. S.X.
0.02 5e-1 38 Oryza sativa OsAffx.31937.1.S1_at - - - 0 C.G. S.X.
0.01 1e+0 36 Populus trichocarpa PtpAffx.44007.3.S1_a_at BU827173 type-a response regulator - 2e-5 At2g40670 ARR16 (ARABIDOPSIS RESPONSE REGULATOR 16) C.G. S.X.
0.02 7e-2 40 Triticum aestivum TaAffx.55893.1.S1_at CA659836 - - 1e+0 At4g16240 unknown protein C.G. S.X.
0.01 3e-1 36 Vitis vinifera 1612068_at CF405105 - - 2e-16 At5g62690 TUB2 C.G. S.X.
0.02 4e-1 36 Zea mays Zm.12612.1.A1_at BU050513 - - 6e-1 At1g23260 MMZ1 (MMS ZWEI HOMOLOGUE 1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006468 The process of introducing a phosphate group on to a protein.
C GO:0007169 The series of molecular signals generated as a consequence of a transmembrane receptor tyrosine kinase binding to its physiological ligand.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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