CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g20550

Gene name oxidoreductase, 2OG-Fe(II) oxygenase family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.48 62.5 At5g20550 832177 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM S.X. H.G.
0.75 86.9 At2g14100 815896 CYP705A13 a member of the cytochrome P450 family S.X. H.G.
0.67 81.6 At1g50520 841474 CYP705A27 member of CYP705A S.X. H.G.
0.58 73.8 At2g27000 817242 CYP705A8 member of CYP705A S.X. H.G.
0.56 73.0 At1g69810 843317 WRKY36 member of WRKY Transcription Factor; Group II-b S.X. H.G.
0.53 68.6 At3g20960 821646 CYP705A33 member of CYP705A S.X. H.G.
0.47 61.2 At5g17330 831599 GAD Encodes one of two isoforms of glutamate decarboxylase. S.X. H.G.
0.45 58.3 At1g12160 837768 flavin-containing monooxygenase family protein / FMO family protein F:NADP or NADPH binding, monooxygenase activity, FAD binding, flavin-containing monooxygenase activity;P:biological_process unknown;C:cellular_component unknown;BOMFPA S.X. H.G.
0.44 57.2 At1g15210 838087 PDR7 (PLEIOTROPIC DRUG RESISTANCE 7) F:ATPase activity, coupled to transmembrane movement of substances;P:multidrug transport;C:plasma membrane, chloroplast, membrane;BOMFAPV S.X. H.G.
0.42 53.9 At4g12080 826816 DNA-binding family protein F:DNA binding;P:unknown;C:mitochondrion, nucleolus, nucleus, cytoplasm;PMFOBV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
102.6 99.9 GSM142752 MJ001_ATH1_A3-jones-rh1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
81.2 99.9 GSM142753 MJ001_ATH1_A4-jones-rh2 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
78.8 99.9 GSM142755 MJ001_ATH1_A6-jones-RH-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
73.0 99.9 GSM231193 wild-type at T0, biological rep1 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
61.1 99.8 GSM231199 chl1 at T0, biological rep1 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
60.3 99.8 GSM231201 chl1 at T0, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
59.6 99.8 GSM231195 wild-type at T0, biological rep3 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
56.4 99.8 GSM231202 chl1 at T0.5, biological rep1 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
56.2 99.8 GSM231196 wild-type at T0.5, biological rep1 GSE9148 Expression data of 10-day-old wild-type and chl1-5 plants exposed to 25 mM nitrate for 0h or 0.5h
50.5 99.8 E-ATMX-13-raw-cel-1556149775
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.89 0 1134 At5g20400 832162 oxidoreductase, 2OG-Fe(II) oxygenase family protein encodes a protein whose sequence is similar to flavanone 3 hydroxylase from Malus. C.G. S.X.
0.80 0 858 At1g49390 841362 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:flavonoid biosynthetic process;C:cellular_component unknown;POBFM C.G. S.X.
0.71 2e-170 599 At5g54000 835483 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM C.G. S.X.
0.02 1e-1 38 At3g60290 825200 oxidoreductase/ oxidoreductase, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biosynthetic process;C:cellular_component unknown;POBFM C.G. S.X.
0.02 1e-1 38 At2g19590 816478 ACO1 (ACC OXIDASE 1) encodes a protein whose sequence is similar to 1-aminocyclopropane-1-carboxylate oxidase C.G. S.X.
0.01 5e-1 36 At5g20690 832192 ATP binding / kinase/ protein serine/threonine kinase F:protein serine/threonine kinase activity, kinase activity, ATP binding;P:transmembrane receptor protein tyrosine kinase signaling pathway, protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
0.01 5e-1 36 At5g02700 831837 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PF C.G. S.X.
0.01 5e-1 36 At3g28410 822470 F-box family protein F:molecular_function unknown;P:biological_process unknown;C:unknown;PF C.G. S.X.
0.03 5e-1 36 At2g44800 819089 oxidoreductase, 2OG-Fe(II) oxygenase family protein F:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity;P:biological_process unknown;C:cellular_component unknown;POBFM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 5e-2 40 Glycine max GmaAffx.72774.3.S1_at BU578220 - - 3e-1 At5g54000 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.06 4e-3 42 Hordeum vulgare HVSMEa0007I03r2_at HVSMEa0007I03r2 - - 5e-3 At5g20400 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.04 3e-7 57 Oryza sativa Os06g0176800 NM_185693.1 - 2OG-Fe(II) oxygenase domain containing protein 4e-8 At5g20400 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.13 8e-10 65 Populus trichocarpa PtpAffx.221833.1.S1_x_at pmrna38911 hypothetical protein - 4e-10 At5g20550 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.07 1e-1 38 Triticum aestivum Ta.14248.1.A1_at BQ839385 - - 1e-1 At5g20550 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.03 2e-1 36 Vitis vinifera 1606698_at CF404442 hypothetical protein LOC100249562 - 4e-1 At5g20550 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
0.04 1e-2 40 Zea mays Zm.11590.1.A1_at BM379183 leucoanthocyanidin dioxygenase - 5e-3 At5g20400 oxidoreductase, 2OG-Fe(II) oxygenase family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0009813 The chemical reactions and pathways resulting in the formation of flavonoids, a group of phenolic derivatives containing a flavan skeleton.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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