CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g20350

Gene name TIP1 (TIP GROWTH DEFECTIVE 1)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g20350 832157 TIP1 (TIP GROWTH DEFECTIVE 1) Encodes a protein containing ankyrin and DHHC-CRD domain. Acts to restrict the size of the swelling that forms at the beginning of root hair cell growth, possibly by a mechanism that requires RHD1. Mutant displays defects in both root hair and pollen tube growth. S.X. H.G.
0.44 57.2 At1g16240 838193 SYP51 (SYNTAXIN OF PLANTS 51) Encodes one of 24 Arabidopsis syntaxins. Its mRNA has been shown to be expressed. S.X. H.G.
0.37 45.0 At3g08650 820012 metal transporter family protein F:metal ion transmembrane transporter activity;P:metal ion transport;C:endomembrane system, membrane;BMOAPF S.X. H.G.
0.36 43.6 At3g19420 821476 ATPEN2 (ARABIDOPSIS THALIANA PTEN 2) F:phosphatase activity, protein tyrosine phosphatase activity;P:dephosphorylation;C:unknown;OMFBPV S.X. H.G.
0.36 43.6 At5g61230 836244 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:unknown;MOFBPVA S.X. H.G.
0.35 41.6 At1g48790 841301 mov34 family protein F:molecular_function unknown;P:ubiquitin-dependent protein catabolic process;C:cellular_component unknown;MFPO S.X. H.G.
0.34 39.8 At4g32760 829412 protein transporter F:protein transporter activity;P:intracellular protein transport, intra-Golgi vesicle-mediated transport;C:Golgi stack, plasma membrane;MOFPBVA S.X. H.G.
0.32 35.7 At1g03900 839378 ATNAP4 (Arabidopsis thaliana non-intrinsic ABC protein 4) member of NAP family, an heterogeneous subfamily of the ATP-binding Cassette (ABC) superfamily of membrane transporters. The NAPs proteins are characterized by having only one nucleotide-binding folds (NBFs) domain. S.X. H.G.
0.31 33.8 At4g02480 827979 AAA-type ATPase family protein F:nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:unknown;C:chloroplast;OBMFPAV S.X. H.G.
0.30 32.1 At1g22620 838868 ATSAC1 (suppressor of actin 1) SAC domain phosphoinositide (3,5)P2 phosphatase. Colocalized with a Golgi Marker. Required for normal cell morphogenesis, cell wall synthesis, and actin organization. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
58.0 99.8 E-MEXP-509-raw-cel-829148703
19.1 99.6 GSM253165 48h into an extended nightB GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
14.6 99.4 GSM128662 Underwood_1-15_Cor-5x10e7-10h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
11.3 99.3 GSM253163 24h into an extended nightB GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
10.6 99.2 GSM128650 Underwood_1-3_Cor-10e6-24h_Rep3_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
10.5 99.2 GSM253166 48h into an extended nightC GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
10.3 99.2 E-MEXP-509-raw-cel-829148165
8.7 99.0 GSM253164 24h into an extended nightC GSE10016 Expression data of Arabidopsis thaliana rosettes in an extended night
8.3 99.0 GSM265411 Arabidopsis, whole roots, -Fe, replicate 1 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
8.3 99.0 GSM128649 Underwood_1-2_Cor-10e6-24h_Rep2_ATH1 GSE5520 Genome-wide transcriptional analysis of the compatible A. thaliana-P. syringae pv. tomato DC3000 interaction
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-1 38 At5g05070 830389 zinc ion binding F:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;MOFP C.G. S.X.
0.01 9e-1 36 At4g04760 825812 sugar transporter family protein F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BFMPOA C.G. S.X.
0.01 9e-1 36 At4g04750 825811 carbohydrate transmembrane transporter/ sugar:hydrogen symporter F:carbohydrate transmembrane transporter activity, sugar:hydrogen symporter activity;P:transport, transmembrane transport;C:integral to membrane, membrane;BMFPOA C.G. S.X.
0.01 9e-1 36 At4g19910 2745716 Toll-Interleukin-Resistance (TIR) domain-containing protein F:transmembrane receptor activity;P:signal transduction, defense response, innate immune response;C:membrane;PBMO C.G. S.X.
0.01 9e-1 36 At4g12750 826887 sequence-specific DNA binding / transcription factor F:transcription factor activity, sequence-specific DNA binding;P:regulation of transcription, DNA-dependent;C:nucleus;PO C.G. S.X.
0.01 9e-1 36 At3g04450 819601 transcription factor F:transcription factor activity;P:regulation of transcription;C:unknown;POMBF C.G. S.X.
0.01 9e-1 36 At1g51690 841594 ATB ALPHA 55 kDa B regulatory subunit of phosphatase 2A mRNA, C.G. S.X.
0.01 9e-1 36 At1g20840 838676 TMT1 (TONOPLAST MONOSACCHARIDE TRANSPORTER1) The protein encoded by this gene is found in the tonoplast (vacuole membrane) of Arabidopsis cells. The gene is expressed at highest levels in juvenile (sink) and adult (source) leaves, followed by flower tissues. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 1e-40 169 Glycine max Gma.16577.1.S1_at CD398681 - - 4e-42 At5g20350 TIP1 (TIP GROWTH DEFECTIVE 1) C.G. S.X.
0.01 1e-1 38 Hordeum vulgare Contig11826_at Contig11826 - - 3e-5 At2g18250 ATCOAD (4-phosphopantetheine adenylyltransferase) C.G. S.X.
0.21 2e-46 188 Oryza sativa Os.10794.2.S1_at - - - 0 C.G. S.X.
0.23 1e-37 159 Populus trichocarpa PtpAffx.214527.1.S1_at pmrna28239 hypothetical protein - 2e-38 At5g20350 TIP1 (TIP GROWTH DEFECTIVE 1) C.G. S.X.
0.10 3e-7 57 Triticum aestivum Ta.30638.1.S1_at AJ577390.1 hypothetical protein LOC543393 - 2e-7 At5g20350 TIP1 (TIP GROWTH DEFECTIVE 1) C.G. S.X.
0.07 2e-5 50 Vitis vinifera 1622425_at CB971457 similar to TIP1 (TIP GROWTH DEFECTIVE 1) - 2e-5 At5g20350 TIP1 (TIP GROWTH DEFECTIVE 1) C.G. S.X.
0.02 2e+0 34 Zea mays Zm.3876.1.S1_at AY111960.1 hypothetical protein LOC100278092 - 5e+0 At4g17030 ATEXLB1 (ARABIDOPSIS THALIANA EXPANSIN-LIKE B1) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009932 Growth that occurs specifically at the tip of a cell.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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