Gene omics information

Query gene ID At5g20300
Gene name chloroplast outer membrane protein, putative
Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.2726.2At5g20300832152chloroplast outer membrane protein, putativeF:GTP binding;P:unknown;C:chloroplast outer membrane, intracellular;MPBOFS.X.H.G.
0.3643.6At5g64360836557DNAJ heat shock N-terminal domain-containing proteinF:heat shock protein binding;P:protein folding;C:cellular_component unknown;BMPOFAS.X.H.G.
0.3541.6At3g50670824230U1-70K (U1 SMALL NUCLEAR RIBONUCLEOPROTEIN-70K)Encodes U1 snRNP 70KS.X.H.G.
0.3133.8At3g54010824568PAS1 (PASTICCINO 1)Immunophilin-like protein similar to the p59 FK506-binding protein (FKBP52). Shows rotamase activity and contains an FKBP-like domain and three tetratricopeptide repeat units. Members of this class of mutation show ectopic cell proliferation in cotyledons. Gene may be alternatively spliced.S.X.H.G.
0.2726.2At3g06400819814CHR11 (CHROMATIN-REMODELING PROTEIN 11)Encodes a SWI2/SNF2 chromatin remodeling protein belonging to the ISWI family. Involved in nuclear proliferation during megagametogenesis and cell expansion in the sporophyte. Constitutively expressed. RNAi induced loss of function in megagametogenesis results in female sterility.35S:RNAi plants have reduced stature.S.X.H.G.
0.2522.6At3g18790821412-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFPBVAS.X.H.G.
0.2420.7At1g48900841312signal recognition particle 54 kDa protein 3 / SRP54 (SRP-54C)F:7S RNA binding, mRNA binding, nucleoside-triphosphatase activity, GTP binding, nucleotide binding;P:SRP-dependent cotranslational protein targeting to membrane, signal sequence recognition, SRP-dependent cotranslational protein targeting to membrane;C:signal recognition particle, signal recognition particle, endoplasmic reticulum targeting;BOAMFPS.X.H.G.
0.2319.3At2g17350816242unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMFBS.X.H.G.
0.2319.3At2g25170817055PKL (PICKLE)Encodes a SWI/SWF nuclear-localized chromatin remodeling factor of the CHD3 group. Involved in post-germination repression of embryonic development. Acts with GA to establish repression of embryonic genes upon germination. Protein preferentially accumulates in differentiating tissues. Loss of function alleles are associated with expression of embryonic traits in adult plants and derepression of embryonic genes such as PHEROS1. Is an extragenic suppressor of slr2 (SSL2). Mutations in PKL (SSL2) restores lateral root formation in the slr2 mutant slr-1. It was proposed that PKL/SSL2-mediated chromatin remodeling negatively regulates auxin-mediated LR formation in Arabidopsis.S.X.H.G.
0.1710.2At1g53750841812RPT1A (REGULATORY PARTICLE TRIPLE-A 1A)26S proteasome AAA-ATPase subunit RPT1a (RPT1a) mRNA,S.X.H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
121.599.9GSM133774Lindsey_1-26_torpedo-meristem_Rep2_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
63.999.8GSM311289Laser capture microdissected (LCM) cellularized endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
53.399.8GSM205435Col_ leaf_ wildtype_rep02GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
51.599.8GSM284391Arabidopsis GPE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
42.499.8GSM133761Lindsey_1-13_torpedo-cotyledon_Rep1_ATH1GSE5730Transcriptional profiling of laser-capture micro-dissected embryonic tissues
40.999.8GSM284390Arabidopsis GPE2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
25.699.7GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
24.199.6GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
21.499.6GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
21.199.6GSM284388Arabidopsis GMPE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
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Homologous genes

Paralogous genes

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HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.021e-346At3g16620820913ATTOC120component of TOC complex, plastid protein import machinery.C.G.S.X.
0.015e-344At2g16640816165TOC132 (MULTIMERIC TRANSLOCON COMPLEX IN THE OUTER ENVELOPE MEMBRANE 132)F:transmembrane receptor activity;P:protein targeting to chloroplast;C:chloroplast outer membrane, membrane;OMFBPVAC.G.S.X.
0.013e-138At5g46240834666KAT1 (POTASSIUM CHANNEL IN ARABIDOPSIS THALIANA 1)Encodes a potassium channel protein (KAT1). ABA triggers KAT1 endocytosis both in epidermal cells as well as guard cells. Upon removal of ABA, KAT1 is recycled back to the plasma membrane. KAT1 is localized within 0.50.6 μm diameter microdomains at the plasma membrane surface.C.G.S.X.
0.013e-138At3g46850823838subtilase family proteinF:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPOFAMC.G.S.X.
0.013e-138At2g26650817206AKT1 (ARABIDOPSIS K TRANSPORTER 1)Shaker-like inward rectifying potassium channel predominantly expressed in predominantly in root hairs and root endodermis.C.G.S.X.
0.013e-138At2g13370815823CHR5 (chromatin remodeling 5)F:chromatin binding, helicase activity, DNA binding, nucleic acid binding, ATP binding;P:chromatin assembly or disassembly;C:chromatin, nucleus;OMBFPVAC.G.S.X.
0.011e+036At4g39120830067IMPL2 (MYO-INOSITOL MONOPHOSPHATASE LIKE 2)Encodes a myo-inositol monophosphatase IMPL2 (myo-Inositol monophosphatase like 2).C.G.S.X.
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Orthologous genes

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HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e-450Glycine maxGma.8193.1.A1_atBU549181--2e+0At5g02920ubiquitin-protein ligaseC.G.S.X.
0.016e-136Hordeum vulgareHA16A22r_x_atHA16A22r--2e+0At3g29160AKIN11 (Arabidopsis SNF1 kinase homolog 11)C.G.S.X.
0.016e-138Oryza sativaOs06g05491009633.m02157--3e+0At5g18250unknown proteinC.G.S.X.
0.082e-656Populus trichocarpaPtpAffx.214543.1.S1_x_atpmrna28261hypothetical protein-1e-6At5g20300chloroplast outer membrane protein, putativeC.G.S.X.
0.015e+034Triticum aestivumTaAffx.114138.1.S1_atCA598043--2e+0At5g37260RVE2 (REVEILLE 2)C.G.S.X.
0.011e+034Vitis vinifera1621937_atCK138151.1hypothetical protein LOC100245655-2e-1At4g02810unknown proteinC.G.S.X.
0.012e+034Zea maysZm.15851.1.A1_atCA404899--4e-29At1g12000pyrophosphate--fructose-6-phosphate 1-phosphotransferase beta subunit, putative / pyrophosphate-dependent 6-phosphofructose-1-kinase, putativeC.G.S.X.
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Biological processes

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ECCGO IDProcess Name
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

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