Gene omics information

Query gene ID At5g20280
Gene name ATSPS1F (sucrose phosphate synthase 1F)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g20280832150ATSPS1F (sucrose phosphate synthase 1F)Encodes a protein with putative sucrose-phosphate synthase activity. When the gene was expressed in transgenic tobacco plants, a clear trend for increased SPS activity was noted.S.X.H.G.
0.3846.7At3g27820822402MDAR4 (MONODEHYDROASCORBATE REDUCTASE 4)Encodes a peroxisome membrane-bound monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2S.X.H.G.
0.2319.3At5g53350835416CLPXCLP protease regulatory subunit CLPX mRNA, nuclear geneS.X.H.G.
0.2217.5At1g70900843429unknown proteinF:molecular_function unknown;P:unknown;C:unknown;PS.X.H.G.
0.2115.8At1g12050837757fumarylacetoacetase, putativeF:fumarylacetoacetase activity, catalytic activity;P:aromatic amino acid family metabolic process, metabolic process;C:cellular_component unknown;BOMFAPS.X.H.G.
0.2115.8At2g47390819352serine-type endopeptidase/ serine-type peptidaseF:serine-type peptidase activity, serine-type endopeptidase activity;P:proteolysis;C:chloroplast stroma, chloroplast;BOMAPFS.X.H.G.
0.2014.4At4g29010829022AIM1 (ABNORMAL INFLORESCENCE MERISTEM)Functions in beta-oxidation of fatty acids, similar to CuMFP with L-3-hydroxyacyl-CoA hydrolyase , L-3-hydroxyacyl-dehydrogenase, D-3-hydroxyacyl-CoA epimerase, and 3, 2-enoyl-CoA isomerase activitiesS.X.H.G.
0.2014.4At5g44000834423glutathione S-transferase C-terminal domain-containing proteinF:glutathione transferase activity;P:unknown;C:chloroplast;BOFPMAS.X.H.G.
0.1811.4At1g70730843410phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putativeF:intramolecular transferase activity, phosphotransferases, magnesium ion binding, phosphoglucomutase activity;P:response to cadmium ion, carbohydrate metabolic process;C:cytosol, nucleus, plasma membrane;BOMFPAS.X.H.G.
0.1710.2At3g46590823812TRFL1 (TRF-LIKE 1)Encodes a protein that specifically binds plant telomeric DNA (TTTAGGG)n repeats. Involved in bending DNA. Expressed throughout the plant with highest levels in flowers.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
30.699.7GSM131608ATGE_42_DGSE5632AtGenExpress: Developmental series (flowers and pollen)
26.399.7GSM131607ATGE_42_CGSE5632AtGenExpress: Developmental series (flowers and pollen)
25.499.6E-TABM-52-raw-cel-1583683438
24.299.6E-MEXP-791-raw-cel-1122937533
23.399.6E-TABM-52-raw-cel-1583683214
23.299.6GSM131606ATGE_42_BGSE5632AtGenExpress: Developmental series (flowers and pollen)
18.899.5E-TABM-52-raw-cel-1583683598
17.199.5GSM128706Shirras_3-3_LabCalcicole-12.5mM-CaCl2_Rep1_ATH1GSE5523Environmental Genomics of Calcicole-calcifuge physiology
17.099.5GSM133957Fukuda_1-2_0B_Rep2_ATH1GSE5748In vitro tracheary element transdifferentiation of Col-0 suspension cells.
16.399.5E-TABM-52-raw-cel-1583682926
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.323e-23111At5g11110830979ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)Encodes a protein with putative sucrose-phosphate synthase activity.Involved in pollen exine formation.C.G.S.X.
0.102e-1585At1g04920839382ATSPS3F (sucrose phosphate synthase 3F)Encodes a protein with putative sucrose-phosphate synthase activity.C.G.S.X.
0.094e-757At4g10120826603ATSPS4FEncodes a protein with putative sucrose-phosphate synthase activity.C.G.S.X.
0.014e-138At1g15220838089CCMHEncodes a protein with oxidoreductase activity present in the inner membrane of mitochondria. CCMH is postulated to play a central role in mitochondrial cytochrome c maturation, probably as part of a heme lyase complex that also holds activity of reducing apocytochrome c. CCMH interacts with apocytochrome AtCYTc-a and is shown to be present in a 500 kDa-complex along with CcmFN2.C.G.S.X.
0.014e-138At1g79640844303ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVAC.G.S.X.
0.014e-138At1g13090837866CYP71B28putative cytochrome P450C.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.294e-76287Glycine maxGma.2097.1.S1_atAW309489--2e-76At5g20280ATSPS1F (sucrose phosphate synthase 1F)C.G.S.X.
0.098e-756Hordeum vulgareContig7277_atContig7277--3e-8At5g11110ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F)C.G.S.X.
0.183e-31139Oryza sativaOs08g0301500AK101676.1-Sucrose-phosphate synthase 2 (EC 2.4.1.14)(Fragment)2e-31At5g20280ATSPS1F (sucrose phosphate synthase 1F)C.G.S.X.
0.406e-158559Populus trichocarpaPtpAffx.141421.1.S1_atDN500621hypothetical protein-1e-158At5g20280ATSPS1F (sucrose phosphate synthase 1F)C.G.S.X.
0.081e-1379Triticum aestivumTa.4256.1.S1_atCD910522Sucrose-phosphate synthase 2-1e-13At5g20280ATSPS1F (sucrose phosphate synthase 1F)C.G.S.X.
0.292e-95349Vitis vinifera1612883_atCF213322hypothetical protein LOC100241955-2e-95At5g20280ATSPS1F (sucrose phosphate synthase 1F)C.G.S.X.
0.102e-138Zea maysZm.5486.1.A1_atAI629867--1e-1At5g20280ATSPS1F (sucrose phosphate synthase 1F)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0005985The chemical reactions and pathways involving sucrose, the disaccharide fructofuranosyl-glucopyranoside.
LGO:0009058The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00022Link to KaPPA-View 4Biosynthesis and metabolism of sucrose
00359Link to KaPPA-View 4Glucosyltransferase



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
00500Link to KEGG PATHWAYStarch and sucrose metabolism
01100Link to KEGG PATHWAYMetabolic pathways
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