CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g20280

Gene name ATSPS1F (sucrose phosphate synthase 1F)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g20280 832150 ATSPS1F (sucrose phosphate synthase 1F) Encodes a protein with putative sucrose-phosphate synthase activity. When the gene was expressed in transgenic tobacco plants, a clear trend for increased SPS activity was noted. S.X. H.G.
0.38 46.7 At3g27820 822402 MDAR4 (MONODEHYDROASCORBATE REDUCTASE 4) Encodes a peroxisome membrane-bound monodehydroascorbate reductase, involved in the ascorbate-glutathione cycle which removes toxic H2O2 S.X. H.G.
0.23 19.3 At5g53350 835416 CLPX CLP protease regulatory subunit CLPX mRNA, nuclear gene S.X. H.G.
0.22 17.5 At1g70900 843429 unknown protein F:molecular_function unknown;P:unknown;C:unknown;P S.X. H.G.
0.21 15.8 At1g12050 837757 fumarylacetoacetase, putative F:fumarylacetoacetase activity, catalytic activity;P:aromatic amino acid family metabolic process, metabolic process;C:cellular_component unknown;BOMFAP S.X. H.G.
0.21 15.8 At2g47390 819352 serine-type endopeptidase/ serine-type peptidase F:serine-type peptidase activity, serine-type endopeptidase activity;P:proteolysis;C:chloroplast stroma, chloroplast;BOMAPF S.X. H.G.
0.20 14.4 At4g29010 829022 AIM1 (ABNORMAL INFLORESCENCE MERISTEM) Functions in beta-oxidation of fatty acids, similar to CuMFP with L-3-hydroxyacyl-CoA hydrolyase , L-3-hydroxyacyl-dehydrogenase, D-3-hydroxyacyl-CoA epimerase, and 3, 2-enoyl-CoA isomerase activities S.X. H.G.
0.20 14.4 At5g44000 834423 glutathione S-transferase C-terminal domain-containing protein F:glutathione transferase activity;P:unknown;C:chloroplast;BOFPMA S.X. H.G.
0.18 11.4 At1g70730 843410 phosphoglucomutase, cytoplasmic, putative / glucose phosphomutase, putative F:intramolecular transferase activity, phosphotransferases, magnesium ion binding, phosphoglucomutase activity;P:response to cadmium ion, carbohydrate metabolic process;C:cytosol, nucleus, plasma membrane;BOMFPA S.X. H.G.
0.17 10.2 At3g46590 823812 TRFL1 (TRF-LIKE 1) Encodes a protein that specifically binds plant telomeric DNA (TTTAGGG)n repeats. Involved in bending DNA. Expressed throughout the plant with highest levels in flowers. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
30.6 99.7 GSM131608 ATGE_42_D GSE5632 AtGenExpress: Developmental series (flowers and pollen)
26.3 99.7 GSM131607 ATGE_42_C GSE5632 AtGenExpress: Developmental series (flowers and pollen)
25.4 99.6 E-TABM-52-raw-cel-1583683438
24.2 99.6 E-MEXP-791-raw-cel-1122937533
23.3 99.6 E-TABM-52-raw-cel-1583683214
23.2 99.6 GSM131606 ATGE_42_B GSE5632 AtGenExpress: Developmental series (flowers and pollen)
18.8 99.5 E-TABM-52-raw-cel-1583683598
17.1 99.5 GSM128706 Shirras_3-3_LabCalcicole-12.5mM-CaCl2_Rep1_ATH1 GSE5523 Environmental Genomics of Calcicole-calcifuge physiology
17.0 99.5 GSM133957 Fukuda_1-2_0B_Rep2_ATH1 GSE5748 In vitro tracheary element transdifferentiation of Col-0 suspension cells.
16.3 99.5 E-TABM-52-raw-cel-1583682926
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.32 3e-23 111 At5g11110 830979 ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F) Encodes a protein with putative sucrose-phosphate synthase activity.Involved in pollen exine formation. C.G. S.X.
0.10 2e-15 85 At1g04920 839382 ATSPS3F (sucrose phosphate synthase 3F) Encodes a protein with putative sucrose-phosphate synthase activity. C.G. S.X.
0.09 4e-7 57 At4g10120 826603 ATSPS4F Encodes a protein with putative sucrose-phosphate synthase activity. C.G. S.X.
0.01 4e-1 38 At1g15220 838089 CCMH Encodes a protein with oxidoreductase activity present in the inner membrane of mitochondria. CCMH is postulated to play a central role in mitochondrial cytochrome c maturation, probably as part of a heme lyase complex that also holds activity of reducing apocytochrome c. CCMH interacts with apocytochrome AtCYTc-a and is shown to be present in a 500 kDa-complex along with CcmFN2. C.G. S.X.
0.01 4e-1 38 At1g79640 844303 ATP binding / kinase/ protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase F:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOFBVA C.G. S.X.
0.01 4e-1 38 At1g13090 837866 CYP71B28 putative cytochrome P450 C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.29 4e-76 287 Glycine max Gma.2097.1.S1_at AW309489 - - 2e-76 At5g20280 ATSPS1F (sucrose phosphate synthase 1F) C.G. S.X.
0.09 8e-7 56 Hordeum vulgare Contig7277_at Contig7277 - - 3e-8 At5g11110 ATSPS2F (SUCROSE PHOSPHATE SYNTHASE 2F) C.G. S.X.
0.18 3e-31 139 Oryza sativa Os08g0301500 AK101676.1 - Sucrose-phosphate synthase 2 (EC 2.4.1.14)(Fragment) 2e-31 At5g20280 ATSPS1F (sucrose phosphate synthase 1F) C.G. S.X.
0.40 6e-158 559 Populus trichocarpa PtpAffx.141421.1.S1_at DN500621 hypothetical protein - 1e-158 At5g20280 ATSPS1F (sucrose phosphate synthase 1F) C.G. S.X.
0.08 1e-13 79 Triticum aestivum Ta.4256.1.S1_at CD910522 Sucrose-phosphate synthase 2 - 1e-13 At5g20280 ATSPS1F (sucrose phosphate synthase 1F) C.G. S.X.
0.29 2e-95 349 Vitis vinifera 1612883_at CF213322 hypothetical protein LOC100241955 - 2e-95 At5g20280 ATSPS1F (sucrose phosphate synthase 1F) C.G. S.X.
0.10 2e-1 38 Zea mays Zm.5486.1.A1_at AI629867 - - 1e-1 At5g20280 ATSPS1F (sucrose phosphate synthase 1F) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0005985 The chemical reactions and pathways involving sucrose, the disaccharide fructofuranosyl-glucopyranoside.
L GO:0009058 The chemical reactions and pathways resulting in the formation of substances; typically the energy-requiring part of metabolism in which simpler substances are transformed into more complex ones.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00022 Biosynthesis and metabolism of sucrose
00359 Glucosyltransferase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00500 Starch and sucrose metabolism
01100 Metabolic pathways
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