Gene omics information

Query gene ID At5g20250
Gene name DIN10 (DARK INDUCIBLE 10)
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.9296.0At5g20250832147DIN10 (DARK INDUCIBLE 10)encodes a member of glycosyl hydrolase family 36. Expression is induced within 3 hours of dark treatment, in senescing leaves and treatment with exogenous photosynthesis inhibitor. Induction of gene expression was suppressed in excised leaves supplied with sugar. The authors suggest that the gene's expression pattern is responding to the level of sugar in the cell.S.X.H.G.
0.7184.2At5g22920832356zinc finger (C3HC4-type RING finger) family proteinF:protein binding, zinc ion binding;P:unknown;C:unknown;MPOFBAS.X.H.G.
0.6781.6At1g11260837667STP1 (SUGAR TRANSPORTER 1)Encodes a H+/hexose cotransporter.S.X.H.G.
0.6781.6At2g30600817610BTB/POZ domain-containing proteinF:protein binding;P:cell adhesion;C:cellular_component unknown;MPOVFS.X.H.G.
0.5570.6At5g19120832032aspartic-type endopeptidaseF:aspartic-type endopeptidase activity;P:proteolysis;C:endomembrane system;PFS.X.H.G.
0.5065.3At5g49360834996BXL1 (BETA-XYLOSIDASE 1)Encodes a bifunctional {beta}-D-xylosidase/{alpha}-L-arabinofuranosidase required for pectic arabinan modification. Located in the extracellular matrix. Gene is expressed specifically in tissues undergoing secondary wall thickening. This is a member of glycosyl hydrolase family 3 and has six other closely related members.S.X.H.G.
0.4761.2At5g211708322435'-AMP-activated protein kinase beta-2 subunit, putativeF:AMP-activated protein kinase activity;P:N-terminal protein myristoylation;C:chloroplast;MFPOBS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
19.599.6E-TABM-63-raw-cel-681137195
17.799.5E-TABM-63-raw-cel-681137124
17.799.5E-TABM-63-raw-cel-681137052
17.699.5E-TABM-63-raw-cel-681137015
13.599.4E-MEXP-1094-raw-cel-1379507233
13.499.4GSM128788Somerville_1-11_stem-GH8_Rep2_ATH1GSE5533Tissue Type Arrays of Columbia-0
12.999.3GSM158703WT-ESTRADIOL-REP1GSE6954Identification of AGL24 downstream genes by using XVE inducible system
12.699.3E-MEXP-715-raw-cel-1121836274
12.499.3E-TABM-63-raw-cel-681136979
12.099.3GSM158702HY213-ESTRADIOL-REP1GSE6954Identification of AGL24 downstream genes by using XVE inducible system
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.103e-1067At3g57520824919AtSIP2 (Arabidopsis thaliana seed imbibition 2)F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:unknown;C:cellular_component unknown;PFBAOC.G.S.X.
0.045e-654At5g40390834037SIP1 (seed imbibition 1-like)Encodes a protein which might be involved in the formation of verbascose. A T-DNA insertion mutant was shown to have a decreased amount of verbascose (as well as mannitol) whereas the levels of raffinose and stachyose remained unchanged.C.G.S.X.
0.023e-448At1g55740842023AtSIP1 (Arabidopsis thaliana seed imbibition 1)F:hydrolase activity, hydrolyzing O-glycosyl compounds;P:unknown;C:cellular_component unknown;PFBAOC.G.S.X.
0.041e-346At4g01265828082raffinose synthase family protein / seed imbibition protein-relatedPseudogene of AT4G01265; raffinose synthase family proteinC.G.S.X.
0.017e-240At5g60660836187PIP2F:water channel activity;P:transport;C:integral to membrane, membrane;BPMOFAVC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.127e-654Glycine maxGmaAffx.85371.1.S1_atBE331688--1e-6At5g20250DIN10 (DARK INDUCIBLE 10)C.G.S.X.
0.045e-136Hordeum vulgareContig6104_atContig6104--1e-3At3g57520AtSIP2 (Arabidopsis thaliana seed imbibition 2)C.G.S.X.
0.146e-1067Oryza sativaOs06g0172800CB657586-Seed imbibition protein (Fragment)3e-10At5g20250DIN10 (DARK INDUCIBLE 10)C.G.S.X.
0.407e-80299Populus trichocarpaPtpAffx.206146.1.S1_x_atpmrna12194hypothetical protein-5e-80At5g20250DIN10 (DARK INDUCIBLE 10)C.G.S.X.
0.017e-240Triticum aestivumTaAffx.54675.1.S1_atCA678448--2e-1At2g41225unknown proteinC.G.S.X.
0.182e-21103Vitis vinifera1616116_atCF604141hypothetical protein LOC100268134-2e-21At5g20250DIN10 (DARK INDUCIBLE 10)C.G.S.X.
0.011e-138Zea maysZm.17597.1.A1_atBM349649ATP synthase3-3e-2At5g47030ATP synthase delta' chain, mitochondrialC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
XGO:0009409A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a cold stimulus, a temperature stimulus below the optimal temperature for that organism.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name
00022Link to KaPPA-View 4Biosynthesis and metabolism of sucrose



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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