CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g20240

Gene name PI (PISTILLATA)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.46 59.8 At5g20240 832146 PI (PISTILLATA) Floral homeotic gene encoding a MADS domain transcription factor. Required for the specification of petal and stamen identities. S.X. H.G.
0.90 95.1 At1g12570 837814 glucose-methanol-choline (GMC) oxidoreductase family protein F:aldehyde-lyase activity, oxidoreductase activity, acting on CH-OH group of donors, FAD binding;P:cellular alcohol metabolic process;C:endomembrane system;OBFMPVA S.X. H.G.
0.90 95.1 At2g42990 818901 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM S.X. H.G.
0.86 93.1 At1g01600 839347 CYP86A4 Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed significantly at highest level in mature stems and flowers. S.X. H.G.
0.86 93.1 At3g10570 820222 CYP77A6 member of CYP77A S.X. H.G.
0.86 93.1 At5g55720 835666 pectate lyase family protein F:lyase activity, pectate lyase activity;P:biological_process unknown;C:endomembrane system;BPFO S.X. H.G.
0.83 91.4 At5g33370 833315 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBOFM S.X. H.G.
0.82 90.9 At1g63710 842675 CYP86A7 Encodes a member of the CYP86A subfamily of cytochrome p450 genes. Expressed at highest level in mature stems and flowers. S.X. H.G.
0.82 90.9 At2g04570 814999 GDSL-motif lipase/hydrolase family protein F:hydrolase activity, acting on ester bonds, carboxylesterase activity;P:lipid metabolic process;C:endomembrane system;PBFOM S.X. H.G.
0.80 89.8 At1g58430 842212 RXF26 Encodes an anther-specific proline-rich protein. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
152.4 99.9 GSM245236 0hr DEX Replicate 1 GSE9702 Identification of putative targets of AP3/PI
134.8 99.9 GSM245253 4hr DEX Replicate 3 GSE9702 Identification of putative targets of AP3/PI
123.2 99.9 GSM245251 4hr DEX Replicate 1 GSE9702 Identification of putative targets of AP3/PI
114.1 99.9 GSM245238 0hr DEX Replicate 3 GSE9702 Identification of putative targets of AP3/PI
111.3 99.9 GSM245256 4hr MOCK Replicate 3 GSE9702 Identification of putative targets of AP3/PI
110.3 99.9 GSM245255 4hr MOCK Replicate 2 GSE9702 Identification of putative targets of AP3/PI
107.7 99.9 GSM245252 4hr DEX Replicate 2 GSE9702 Identification of putative targets of AP3/PI
88.7 99.9 GSM245254 4hr MOCK Replicate 1 GSE9702 Identification of putative targets of AP3/PI
87.3 99.9 GSM245237 0hr DEX Replicate 2 GSE9702 Identification of putative targets of AP3/PI
81.1 99.9 GSM106833 opr3_JA_0.5 hr_Rep1 GSE4733 Transcriptional regulators of stamen development in Arabidopsis identified by transcriptional profiling
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.06 1e-6 54 At4g09960 826586 STK (SEEDSTICK) a MADS box transcription factor expressed in the carpel and ovules C.G. S.X.
0.05 5e-6 52 At5g23260 832390 TT16 (TRANSPARENT TESTA16) Encodes a MADS box protein. Regulates proanthocyanidin biosynthesis in the inner-most cell layer of the seed coat. Also controls cell shape of the inner-most cell layer of the seed coat. Also shown to be necessary for determining the identity of the endothelial layer within the ovule. C.G. S.X.
0.04 2e-5 50 At2g42830 818883 SHP2 (SHATTERPROOF 2) AGAMOUS [AG]-like MADS box protein (AGL5) involved in fruit development (valve margin and dehiscence zone differentiation). A putative direct target of AG. SHP2 has been shown to be a downstream gene of the complex formed by AG and SEP proteins (SEP4 alone does not form a functional complex with AG). C.G. S.X.
0.08 1e-3 44 At5g13790 831224 AGL15 (AGAMOUS-LIKE 15) AGL15 (AGAMOUS-Like 15) is a member of the MADS domain family of regulatory factors. Although AGL15 is preferentially expressed during embryogenesis, AGL15 is also expressed in leaf primordia, shoot apical meristems and young floral buds, suggesting that AGL15 may play a role during post-germinative development. Transgenic plants that ectopically express AGL15 show delays in the transition to flowering, perianth abscission and senescence and fruit and seed maturation. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.14 7e-6 52 Glycine max GmaAffx.41949.2.S1_at AW733646 - - 4e-6 At5g20240 PI (PISTILLATA) C.G. S.X.
0.03 2e+0 32 Hordeum vulgare AF146273_at AF146273 - - 2e+0 At5g20240 PI (PISTILLATA) C.G. S.X.
0.07 1e-2 42 Oryza sativa Os08g0431900 AY345220.1 - Transcription factor MADS23 6e-6 At3g57230 AGL16 (AGAMOUS-LIKE 16) C.G. S.X.
0.12 7e-3 42 Populus trichocarpa PtpAffx.207908.1.S1_at pmrna15697 hypothetical protein - 9e-36 At2g03710 SEP4 (SEPALLATA 4) C.G. S.X.
0.06 3e-4 46 Triticum aestivum Ta.4889.1.S1_at AB107992.1 PISTILLATA-like MADS box protein - 6e-4 At5g20240 PI (PISTILLATA) C.G. S.X.
0.13 2e-9 61 Vitis vinifera 1614123_at CF373459 PISTILLATA-like MADS-box protein-like - 8e-9 At5g20240 PI (PISTILLATA) C.G. S.X.
0.04 1e-4 46 Zea mays Zm.134.1.S1_at U31521.1 Zea AGAMOUS homolog2 - 5e-11 At2g42830 SHP2 (SHATTERPROOF 2) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006355 Any process that modulates the frequency, rate or extent of DNA-dependent transcription.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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