Gene omics information

Query gene ID At5g20170
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8089.8At5g20170832140unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MPFS.X.H.G.
0.5673.0At5g49530835014SIN-like family proteinF:DNA-directed RNA polymerase activity;P:transcription;C:nucleus;MOFPBS.X.H.G.
0.5469.5At5g10630830928elongation factor 1-alpha, putative / EF-1-alpha, putativeF:GTP binding, translation elongation factor activity, GTPase activity, zinc ion binding;P:biological_process unknown;C:intracellular;BMOFPAVS.X.H.G.
0.5267.4At3g44600823585CYP71 (CYCLOPHILIN71)Cyclophilin71 is a WD40 domain cyclophilin, which functions in gene repression, organogenesis and meristem development. CYP71 physically interacts with histone H3.S.X.H.G.
0.5166.3At2g47250819338RNA helicase, putativeF:in 7 functions;P:unknown;C:membrane, chloroplast envelope;MBOFVPS.X.H.G.
0.5166.3At1g03910839371-F:unknown;P:unknown;C:unknown;MOFPBVAS.X.H.G.
0.5065.3At3g069403768779transposable element geneF:unknown;P:unknown;C:unknownS.X.H.G.
0.4862.5At2g26200817160-F:unknown;P:unknown;C:unknown;MOBFPAS.X.H.G.
0.4862.5At5g63110836431HDA6 (HISTONE DEACETYLASE 6)RPD3-like histone deacetylase. HDA6 mutations specifically increase the expression of auxin-responsive transgenes, suggesting a role in transgene silencing.S.X.H.G.
0.4761.2At1g60560842351SWIM zinc finger family proteinF:zinc ion binding;P:biological_process unknown;C:cellular_component unknown;PMFS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
33.299.7GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
25.399.6GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
25.199.6GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
23.899.6GSM205432Col_ leaf_ wildtype_rep01GSE8279Transgenerational Stability of the Arabidopsis Epigenome Is Coordinated by CG Methylation
21.799.6GSM143301Ts_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
21.499.6GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
21.299.6GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
20.099.6GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
19.899.6GSM253647Col-0 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
18.099.5GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-346At1g05830837093ATX2 (ARABIDOPSIS TRITHORAX-LIKE PROTEIN 2)Encodes a homolog of trithorax, a histone-lysine N-methyltransferase. Paralog of ATX1. Unlike ATX1 which is involved in trimethylating of histone H3-mysine 4, ATX2 is involved in dimethylating of histone H3-lysine 4. ATX1 and ATX2 influence the expression of largely nonoverlapping gene sets. The expression pattern of ATX2 is also different from that of ATX1.C.G.S.X.
0.014e-344At5g58000835911-F:unknown;P:unknown;C:endoplasmic reticulum, chloroplast;MOPFVBC.G.S.X.
0.014e-344At3g43610823458tubulin bindingF:tubulin binding;P:microtubule cytoskeleton organization;C:chloroplast, spindle pole, microtubule organizing center;MFPOC.G.S.X.
0.012e-242At4g38440830001-F:unknown;P:unknown;C:chloroplast;MFPOBC.G.S.X.
0.022e-242At4g19550827697transcription regulator/ zinc ion bindingF:transcription regulator activity, zinc ion binding;P:regulation of transcription, DNA-dependent, transcription initiation;C:transcription factor complex;OMPFBVC.G.S.X.
0.022e-242At4g09040826483RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:biological_process unknown;C:chloroplast stroma, chloroplast;MPFOBAC.G.S.X.
0.012e-242At3g16840820937ATP binding / ATP-dependent helicase/ helicase/ nucleic acid bindingF:helicase activity, nucleic acid binding, ATP binding, ATP-dependent helicase activity;P:biological_process unknown;C:cellular_component unknown;MOBFPAVC.G.S.X.
0.012e-242At3g57700824939protein kinase, putativeF:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.029e-240Glycine maxPsAffx.psML009xD16f_atPsAffx.psML009xD16f--1e+1At5g65730xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putativeC.G.S.X.
0.038e-652Hordeum vulgareContig11660_atContig11660--2e-5At5g20170unknown proteinC.G.S.X.
0.045e-448Oryza sativaOs12g0638600AK065543.1-Hypothetical protein3e-4At5g20170unknown proteinC.G.S.X.
0.029e-240Populus trichocarpaPtpAffx.208220.1.S1_atpmrna16360hypothetical protein-7e-4At5g02570histone H2B, putativeC.G.S.X.
0.027e-240Triticum aestivumTaAffx.71195.1.S1_atBE492326--1e-2At2g40830RHC1AC.G.S.X.
0.022e-240Vitis vinifera1608002_s_atCF209324hypothetical protein LOC100259302-4e+0At3g13229unknown proteinC.G.S.X.
0.021e-138Zea maysZmAffx.283.1.A1_atAI670414--3e+0At3g23175lesion inducing protein-relatedC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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