CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g20140

Gene name SOUL heme-binding family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
1.00 100.0 At5g20140 832136 SOUL heme-binding family protein F:binding;P:biological_process unknown;C:chloroplast thylakoid membrane, chloroplast;OBPMA S.X. H.G.
0.62 77.3 At4g17360 827448 formyltetrahydrofolate deformylase/ hydroxymethyl-, formyl- and related transferase/ methyltransferase encodes one of the two putative formyltetrahydrofolate deformylase. Located in the mitochondrion. Involved in photorespiratory tetrahydrofolate cycle. S.X. H.G.
0.59 74.7 At2g30390 817589 FC2 (FERROCHELATASE 2) Encodes one of two ferrochelatase genes in Arabidopsis. Ferrochelatase is the terminal enzyme of heme biosynthesis. FC-II is speculated to operate in photosynthetic cytochromes S.X. H.G.
0.58 73.8 At1g49380 841361 cytochrome c biogenesis protein family F:molecular_function unknown;P:cytochrome complex assembly;C:chloroplast;BOPM S.X. H.G.
0.57 73.8 At1g77090 844043 thylakoid lumenal 29.8 kDa protein F:calcium ion binding;P:photosynthesis;C:thylakoid, thylakoid lumen, chloroplast thylakoid lumen, chloroplast stroma, chloroplast;POB S.X. H.G.
0.57 73.8 At1g31190 840007 IMPL1 (MYO-INOSITOL MONOPHOSPHATASE LIKE 1) Encodes a myo-inositol monophosphatase IMPL1 (myo-Inositol monophosphatase like 1). S.X. H.G.
0.55 70.6 At5g45170 834553 CbbY protein-related F:molecular_function unknown;P:biological_process unknown;C:chloroplast stroma, chloroplast;BPO S.X. H.G.
0.55 70.6 At5g08650 830766 GTP-binding protein LepA, putative F:GTP binding, translation elongation factor activity, GTPase activity;P:unknown;C:chloroplast;BOMFPA S.X. H.G.
0.54 69.5 At2g32500 817811 - F:molecular_function unknown;P:biological_process unknown;C:unknown;PBO S.X. H.G.
0.54 69.5 At5g27560 832816 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OBP S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
75.3 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
21.3 99.6 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
19.8 99.6 GSM176876 AWP_AL_Txed_1 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
18.9 99.5 E-ATMX-25-raw-cel-1441077398
18.7 99.5 GSM143299 High_Na_seg_pool_ts_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
18.4 99.5 E-ATMX-25-raw-cel-1441077379
17.8 99.5 GSM143301 Ts_genomic_hyb_2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
17.6 99.5 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
15.8 99.5 E-ATMX-25-raw-cel-1441077420
15.6 99.5 GSM143307 Low_Na_seg_pool_tsu_col_F2 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 6e-1 36 At4g02300 827708 pectinesterase family protein F:enzyme inhibitor activity, pectinesterase activity;P:cell wall modification;C:endomembrane system, cell wall, plant-type cell wall;PBFM C.G. S.X.
0.01 2e+0 34 At5g45520 834588 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;MOBFPVA C.G. S.X.
0.01 2e+0 34 At5g41490 834150 F-box family protein F:unknown;P:biological_process unknown;C:cellular_component unknown;PF C.G. S.X.
0.01 2e+0 34 At5g01400 831597 ESP4 (ENHANCED SILENCING PHENOTYPE 4) Encodes a Symplekin/Pta1 homologue which would have the potential to interact with either ESP1 or AtCstF64. C.G. S.X.
0.02 2e+0 34 At5g40595 834058 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
0.01 2e+0 34 At4g20800 827828 FAD-binding domain-containing protein F:oxidoreductase activity, FAD binding, catalytic activity;P:unknown;C:endomembrane system;FBPOAM C.G. S.X.
0.02 2e+0 34 At4g30340 829157 ATDGK7 (Diacylglycerol kinase 7) encodes a diacylglycerol kinase. Applying a specific diacylglycerol kinase inhibitor to the growth media resulted in reduced root elongation and plant growth. Gene is expressed throughout the plant but is strongest in flowers and young seedlings. C.G. S.X.
0.01 2e+0 34 At3g05680 819736 EMB2016 (embryo defective 2016) F:molecular_function unknown;P:embryonic development ending in seed dormancy;C:cellular_component unknown;MOFPBV C.G. S.X.
0.01 2e+0 34 At3g46420 823792 leucine-rich repeat family protein / protein kinase family protein F:protein binding, protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.23 3e-9 63 Glycine max GmaAffx.83362.1.S1_at AW119427 - - 2e-9 At5g20140 SOUL heme-binding family protein C.G. S.X.
0.04 7e-2 38 Hordeum vulgare HVSMEc0011A03f_at HVSMEc0011A03f - - 1e-23 Atcg00520 - C.G. S.X.
0.11 5e-6 54 Oryza sativa Os06g0597900 AK065544.1 - - 3e-6 At5g20140 SOUL heme-binding family protein C.G. S.X.
0.14 3e-6 54 Populus trichocarpa Ptp.4433.1.S1_at CA923846 - - 2e-6 At5g20140 SOUL heme-binding family protein C.G. S.X.
0.02 2e+0 34 Triticum aestivum Ta.22047.2.S1_at BJ312638 - - 7e-8 At1g49540 nucleotide binding C.G. S.X.
0.12 3e-9 61 Vitis vinifera 1620267_at CB972336 hypothetical protein LOC100264696 - 7e-9 At5g20140 SOUL heme-binding family protein C.G. S.X.
0.03 2e-1 36 Zea mays Zm.8706.1.A1_at BM075281 - - 4e+0 At4g05050 UBQ11 (UBIQUITIN 11) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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