Gene omics information

Query gene ID At5g20030
Gene name agenet domain-containing protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g20030832125agenet domain-containing proteinF:RNA binding;P:biological_process unknown;C:cellular_component unknown;PMOS.X.H.G.
0.1710.2At1g270708395965'-AMP-activated protein kinase-relatedF:unknown;P:unknown;C:unknown;MFPOBAS.X.H.G.
0.124.9At5g04270830306zinc ion bindingF:zinc ion binding;P:biological_process unknown;C:endomembrane system;MOFPS.X.H.G.
0.114.1At1g29550839832eukaryotic translation initiation factor 4E, putative / eIF-4E, putative / eIF4E, putative / mRNA cap-binding protein, putativeF:RNA binding, translation initiation factor activity;P:translational initiation;C:cytoplasm;MOPFS.X.H.G.
0.114.1At3g03880821095unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PS.X.H.G.
0.092.8At3g07930819984HhH-GPD base excision DNA repair family proteinF:unknown;P:base-excision repair;C:unknown;MPOS.X.H.G.
0.082.3At4g23840828483leucine-rich repeat family proteinF:protein binding;P:unknown;C:cellular_component unknown;BMPOFVAS.X.H.G.
0.061.4At2g42670818867unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
83.299.9GSM253645High_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
81.499.9GSM184551Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
79.799.9GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
77.599.9GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
77.499.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
72.099.9GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
65.499.8GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
60.899.8GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
60.499.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
59.899.8GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.021e-138At2g25590817098agenet domain-containing proteinF:RNA binding;P:biological_process unknown;C:unknown;PC.G.S.X.
0.025e-136At3g62460825420-F:unknown;P:biological_process unknown;C:mitochondrion;PC.G.S.X.
0.015e-136At2g03150814844emb1579 (embryo defective 1579)F:binding, calcium ion binding;P:embryonic development ending in seed dormancy;C:cytosol;MOFBPVAC.G.S.X.
0.015e-136At2g33240817886XIDmember of Myosin-like proteinsC.G.S.X.
0.015e-136At1g79830844322GC5 (golgin candidate 5)This gene is predicted to encode a protein that functions as a Golgi apparatus structural component known as a golgin in mammals and yeast. A fluorescently-tagged version of GC5 co-localizes with Golgi markers, and this localization appears to be replicated using the C-terminal (139 aa) portion of the protein. The C-terminal portion of the protein can also specifically interact with two members of the Rab family of GTPases (RabH1b and RabH1c).C.G.S.X.
0.022e+034At5g14660831318PDF1B (PEPTIDE DEFORMYLASE 1B)encodes a peptide deformylase-like proteinC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.034e-240Glycine maxGmaAffx.79444.1.S1_atBG156754--2e+0At1g64850calcium-binding EF hand family proteinC.G.S.X.
0.024e+032Hordeum vulgareContig16507_atContig16507--4e+0At5g64400-C.G.S.X.
0.011e+036Oryza sativaOs05g0279600AK070566.1-Conserved hypothetical protein3e-9At4g30900-C.G.S.X.
0.053e+034Populus trichocarpaPtpAffx.214186.1.S1_atpmrna27597hypothetical protein-1e-5At4g32440agenet domain-containing proteinC.G.S.X.
0.032e+034Triticum aestivumTaAffx.65248.1.A1_atBJ254955--3e-1At1g69720ho3 (HEME OXYGENASE 3)C.G.S.X.
0.032e+032Vitis vinifera1621173_s_atCF514876hypothetical protein LOC100245878-1e+0At2g33870ArRABA1h (Arabidopsis Rab GTPase homolog A1h)C.G.S.X.
0.023e+032Zea maysZmAffx.43.1.A1_atAI664875hypothetical protein LOC100279955-1e-5At5g06830unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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