CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g19970

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.65 79.6 At5g19970 832119 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.64 78.9 At5g25160 832587 ZFP3 (ZINC FINGER PROTEIN 3) Encodes a zinc finger protein containing only a single zinc finger. S.X. H.G.
0.60 75.7 At1g31060 839992 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PM S.X. H.G.
0.58 73.8 At2g30840 817635 2-oxoglutarate-dependent dioxygenase, putative encodes a protein whose sequence is similar to 2-oxoglutarate-dependent dioxygenase S.X. H.G.
0.55 70.6 At4g25090 828612 respiratory burst oxidase, putative / NADPH oxidase, putative F:in 7 functions;P:oxidation reduction;C:cytosolic ribosome, vacuole;MFPBOA S.X. H.G.
0.54 69.5 At1g31885 840079 transporter F:transporter activity;P:transport;C:integral to membrane, membrane;BPOMFAV S.X. H.G.
0.54 69.5 At1g13300 837890 myb family transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription;C:unknown;POVBMF S.X. H.G.
0.54 69.5 At4g15400 827208 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:unknown;C:cellular_component unknown;PFB S.X. H.G.
0.54 69.5 At2g28960 817445 leucine-rich repeat protein kinase, putative F:in 6 functions;P:protein amino acid phosphorylation;C:endomembrane system;MPOBFVA S.X. H.G.
0.53 68.6 At1g68940 843228 armadillo/beta-catenin repeat protein-related / U-box domain-containing protein F:ubiquitin-protein ligase activity, binding;P:protein ubiquitination;C:ubiquitin ligase complex;POMBFV S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
55.7 99.8 GSM265433 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
53.0 99.8 GSM179963 Arabidopsis aux1 mutant roots, air treatment, replica 1 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
52.7 99.8 GSM265432 Arabidopsis, root, longitudinal zone 4, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
51.5 99.8 GSM179958 Arabidopsis roots, air treatment, replica 1 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
50.4 99.8 GSM218592 Whole roots 3.5hr KCl control treated then frozen, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
49.3 99.8 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
46.4 99.8 GSM157323 Hammond_3-16_Control-root_Rep3_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
45.5 99.8 GSM179959 Arabidopsis roots, air treatment, replica 2 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
42.3 99.8 GSM218591 Whole roots 3.5hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
42.1 99.8 GSM179967 Arabidopsis aux1 mutant roots, air treatment, replica 2 GSE7432 Ethylene and auxin interactions in the roots of Arabidopsis seedlings
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 5e-1 36 At1g34370 840339 STOP1 (sensitive to proton rhizotoxicity 1) Encodes a putative nuclear Cys(2)His(2)-type zinc finger protein involved in H+ and Al3+ rhizotoxicity. In mutants exposed to aluminum stress, there is no induction of AtALMT1, an malate transporter known to be involved in the mediation of aluminum toxicity. C.G. S.X.
0.01 2e+0 34 At3g11590 820332 unknown protein F:unknown;P:unknown;C:plasma membrane;MOBFPAV C.G. S.X.
0.01 2e+0 34 At2g16650 816166 antiporter/ drug transporter F:drug transporter activity, antiporter activity;P:multidrug transport;C:chloroplast, membrane;PMO C.G. S.X.
0.01 8e+0 32 At5g65490 836674 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFBPVA C.G. S.X.
0.01 8e+0 32 At5g02810 831793 PRR7 (PSEUDO-RESPONSE REGULATOR 7) PRR7 and PRR9 are partially redundant essential components of a temperature-sensitive circadian system. CCA1 and LHY had a positive effect on PRR7 expression levels. C.G. S.X.
0.01 8e+0 32 At5g45640 834604 subtilase family protein F:identical protein binding, serine-type endopeptidase activity;P:proteolysis, negative regulation of catalytic activity;C:endomembrane system;BPFOMA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.03 2e-1 38 Glycine max GmaAffx.90871.1.S1_s_at CF806596 - - 1e-21 At1g36980 unknown protein C.G. S.X.
0.03 4e+0 32 Hordeum vulgare Contig26247_at Contig26247 - - 2e+0 At5g19970 unknown protein C.G. S.X.
0.02 4e+0 34 Oryza sativa OsAffx.24312.1.S1_at - - - 0 C.G. S.X.
0.02 3e+0 34 Populus trichocarpa PtpAffx.209719.1.S1_at pmrna19184 hypothetical protein - 2e-28 At1g11250 SYP125 (SYNTAXIN OF PLANTS 125) C.G. S.X.
0.02 6e-1 36 Triticum aestivum TaAffx.96741.2.S1_at BJ318859 - - 1e+0 At5g19720 tRNA synthetase class I (E and Q) family protein C.G. S.X.
0.03 6e-1 34 Vitis vinifera 1608079_at CB339397 - - 6e-2 At4g10130 DNAJ heat shock N-terminal domain-containing protein C.G. S.X.
0.02 4e+0 32 Zea mays Zm.15881.1.A1_x_at BM379962 - - 8e-1 At5g56710 60S ribosomal protein L31 (RPL31C) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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