Gene omics information

Query gene ID At5g19930
Gene name integral membrane family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.157.8At5g19930832115integral membrane family proteinF:unknown;P:unknown;C:endomembrane system;OBMAFPS.X.H.G.
0.5065.3At3g06300819804AT-P4H-2 (A. THALIANA P4H ISOFORM 2)Encodes a prolyl-4 hydroxylase that can hydroxylate poly(L-proline)and other proline rich peptides, including those with sequences corresponding to those in arabinogalactan proteins and extensins.S.X.H.G.
0.4761.2At2g17720816281oxidoreductase, 2OG-Fe(II) oxygenase family proteinF:oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen, 2-oxoglutarate as one donor, and incorporation of one atom each of oxygen into both donors, oxidoreductase activity, iron ion binding;P:protein metabolic process, peptidyl-proline hydroxylation to 4-hydroxy-L-proline;C:unknown;MOPBFVS.X.H.G.
0.3541.6At2g17130816218IDH2 (ISOCITRATE DEHYDROGENASE SUBUNIT 2)NAD+ dependent isocitrate dehydrogenase subunit 2 (IDH2)S.X.H.G.
0.3338.1At4g33360829473terpene cyclase/mutase-relatedF:coenzyme binding, binding, catalytic activity;P:cellular metabolic process, terpenoid metabolic process, metabolic process;C:endoplasmic reticulum, plasma membrane, vacuole;BOPFMAVS.X.H.G.
0.2014.4At3g20510821597unknown proteinF:unknown;P:biological_process unknown;C:nucleus, cytoplasm;MPBFOS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
40.599.8GSM266671Arabidopsis, root cells, cortex, -Fe, replicate 3GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
31.099.7GSM266670Arabidopsis, root cells, cortex, -Fe, replicate 2GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
30.699.7GSM184895Arabidopsis, root cells, cortex, standard conditions, replicate 1GSE7641Expression analysis of root cell-types after treatment with salt
27.399.7GSM184896Arabidopsis, root cells, cortex, standard conditions, replicate 2GSE7641Expression analysis of root cell-types after treatment with salt
26.299.7GSM184900Arabidopsis, root cells, endodermis and quiescent center, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
25.699.7GSM265425Arabidopsis, root, longitudinal zone 4, standard conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
24.499.6GSM265429Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
23.399.6GSM265431Arabidopsis, root, longitudinal zone 3, -Fe conditions, rep 2GSE10497Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
21.099.6GSM266669Arabidopsis, root cells, cortex, -Fe, replicate 1GSE10501Expression analysis of root cell-types after iron deficiency (-Fe) treatment
19.599.6GSM184897Arabidopsis, root cells, cortex, standard conditions, replicate 3GSE7641Expression analysis of root cell-types after treatment with salt
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-138At5g12370831112SEC10 (EXOCYST COMPLEX COMPONENT SEC10)F:molecular_function unknown;P:exocytosis, vesicle docking;C:plasma membrane, membrane, exocyst;FMPOBC.G.S.X.
0.011e-138At3g28415822471P-glycoprotein, putativeF:ATPase activity, coupled to transmembrane movement of substances, nucleoside-triphosphatase activity, ATPase activity, nucleotide binding, ATP binding;P:transport;C:plasma membrane, membrane;BOMAFPVC.G.S.X.
0.004e-136At4g27010828809unknown proteinF:unknown;P:biological_process unknown;C:cellular_component unknown;MFPOC.G.S.X.
0.024e-136At4g22900828389unknown proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;PFC.G.S.X.
0.034e-136At2g34140817975Dof-type zinc finger domain-containing proteinF:transcription factor activity, DNA binding;P:regulation of transcription;C:cellular_component unknown;POC.G.S.X.
0.024e-136At2g25290817067bindingF:binding;P:biological_process unknown;C:cellular_component unknown;MOPFBAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.036e-136Glycine maxGmaAffx.86499.1.S1_atBG727046--3e-53At5g57610protein kinase family proteinC.G.S.X.
0.051e-240Hordeum vulgareContig10490_s_atContig10490--2e-2At5g19930integral membrane family proteinC.G.S.X.
0.066e-859Oryza sativaOs01g0507300AK099867.1--5e-8At5g19930integral membrane family proteinC.G.S.X.
0.291e-1791Populus trichocarpaPtpAffx.3403.1.A1_atCV242687hypothetical protein-1e-17At5g19930integral membrane family proteinC.G.S.X.
0.037e+032Triticum aestivumTaAffx.66027.1.S1_atBJ211492--1e-1At3g13882structural constituent of ribosomeC.G.S.X.
0.022e+032Vitis vinifera1611791_atCB002442--3e-1At3g52360unknown proteinC.G.S.X.
0.021e+130Zea maysZmAffx.298.1.A1_atAI670431--3e+0At2g46375unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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