Gene omics information

Query gene ID At5g19900
Gene name PRLI-interacting factor, putative
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
1.00100.0At5g19900832112PRLI-interacting factor, putativeF:molecular_function unknown;P:biological_process unknown;C:chloroplast;OMFPBVAS.X.H.G.
0.7184.2At1g711708434576-phosphogluconate dehydrogenase NAD-binding domain-containing proteinF:coenzyme binding, oxidoreductase activity, binding, phosphogluconate dehydrogenase (decarboxylating) activity, catalytic activity;P:pentose-phosphate shunt, metabolic process;C:cellular_component unknown;BOMFPAS.X.H.G.
0.6781.6At1g15200838086protein-protein interaction regulator family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFBPVAS.X.H.G.
0.6781.6At2g39260818511RNA binding / binding / protein bindingF:protein binding, RNA binding, binding;P:translation, RNA metabolic process;C:cellular_component unknown;MOFBPVAS.X.H.G.
0.6781.6At5g25060832577RNA recognition motif (RRM)-containing proteinF:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:unknown;MOFPBVAS.X.H.G.
0.6378.1At1g28420839740HB-1 (homeobox-1)F:transcription factor activity;P:regulation of transcription, DNA-dependent, regulation of transcription;C:nucleus;MOFBPVAS.X.H.G.
0.6378.1At1g65440842855GTB1Related to yeast Spt6 protein, which functions as part of a protein complex in transcription initiation and also plays a role in chromatin structure / assembly.S.X.H.G.
0.5368.6At3g50690824233leucine-rich repeat family proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAS.X.H.G.
0.5368.6At5g44080834431bZIP transcription factor family proteinF:transcription factor activity;P:regulation of transcription, DNA-dependent;C:nucleus, chloroplast;PMOFVS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
299.5100.0GSM311291Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
247.7100.0GSM311292Laser capture microdissected (LCM) chalazal endosperm at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
193.9100.0GSM311282Laser capture microdissected (LCM) chalazal seed coat at the pre-globular stage, biological replicate 2GSE12402Expression data from Arabidopsis seed compartments at the pre-globular stage
189.0100.0GSM311294Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 2GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
166.4100.0GSM284398Arabidopsis GGSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
162.599.9GSM311293Laser capture microdissected (LCM) chalazal seed coat at the linear-cotyledon stage, biological replicate 1GSE12403Expression data from Arabidopsis seed compartments at the linear-cotyledon stage
135.399.9GSM284395Arabidopsis GPSc1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
117.799.9GSM284396Arabidopsis GPSc2GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
114.999.9GSM284391Arabidopsis GPE3GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
104.799.9GSM284388Arabidopsis GMPE1GSE11262Expression data from Arabidopsis Seed Compartments at the Globular Embryo Stage.
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.011e-242At4g22760828375pentatricopeptide (PPR) repeat-containing proteinF:unknown;P:biological_process unknown;C:chloroplast;POMFBC.G.S.X.
0.015e-240At5g14540831305proline-rich family proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MFOPBVAC.G.S.X.
0.025e-240At5g46030834644unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;MOFPVBAC.G.S.X.
0.015e-240At4g20450827793leucine-rich repeat protein kinase, putativeF:kinase activity;P:protein amino acid phosphorylation;C:endomembrane system;PMOBFVAC.G.S.X.
0.025e-240At2g39720818556RHC2AEncodes a putative RING-H2 finger protein RHC2a.C.G.S.X.
0.015e-240At1g70980843436SYNC3F:in 6 functions;P:asparaginyl-tRNA aminoacylation, aspartyl-tRNA aminoacylation, translation, tRNA aminoacylation for protein translation;C:cytoplasm;BOMFAPC.G.S.X.
0.022e-138At5g10070830871RNase L inhibitor protein-relatedF:molecular_function unknown;P:biological_process unknown;C:cytosol, nucleus;OAMFPC.G.S.X.
0.012e-138At5g06550830543-F:molecular_function unknown;P:cell surface receptor linked signal transduction;C:unknown;MBOFPC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.027e-240Glycine maxHgAffx.13724.1.S1_atCB826579--1e+0At4g20970basic helix-loop-helix (bHLH) family proteinC.G.S.X.
0.024e-136Hordeum vulgareContig3010_s_atContig3010--7e-2At3g46830ATRABA2C (ARABIDOPSIS RAB GTPASE HOMOLOG A2C)C.G.S.X.
0.029e-240Oryza sativaOsAffx.3187.1.S1_s_at---0C.G.S.X.
0.222e-39165Populus trichocarpaPtpAffx.98729.1.S1_s_atCV243367hypothetical protein-2e-39At5g19900PRLI-interacting factor, putativeC.G.S.X.
0.025e-240Triticum aestivumTaAffx.70742.1.S1_atBQ800902--1e-2At3g55460SCL30C.G.S.X.
0.151e-24113Vitis vinifera1611913_atCF415824hypothetical protein LOC100251191-2e-24At5g19900PRLI-interacting factor, putativeC.G.S.X.
0.022e-240Zea maysZm.6246.2.A1_atAI677558--9e-7At2g22080unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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