CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g19890

Gene name peroxidase, putative

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.55 70.6 At5g19890 832111 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:nucleus, cytoplasm;PFOB S.X. H.G.
0.67 81.6 At3g05950 819765 germin-like protein, putative F:manganese ion binding, nutrient reservoir activity;P:biological_process unknown;C:endomembrane system, apoplast;PFBO S.X. H.G.
0.50 65.3 At3g03670 821193 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:plant-type cell wall;PFOB S.X. H.G.
0.44 57.2 At1g26250 839166 proline-rich extensin, putative F:structural constituent of cell wall;P:plant-type cell wall organization;C:endomembrane system;MPBOFVA S.X. H.G.
0.29 30.3 At4g08620 826426 SULTR1 High affinity sulfate transporter. Contains STAS domain, essential for sulfur uptake function. Expressed in roots and guard cells. Up-regulated by sulfur deficiency. Down-regulated by cytokinin. Localized to the plasma membrane. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
179.9 100.0 GSM157327 Hammond_3-11_Potassium-starved-root_Rep2_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
177.1 100.0 GSM157323 Hammond_3-16_Control-root_Rep3_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
170.0 100.0 GSM142725 CH001_ATH1_A004-Hampt-c1a GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
158.1 99.9 GSM142732 CH001_ATH1_A011-Hampt-c4c GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
147.6 99.9 GSM142728 CH001_ATH1_A007-Hampt-c4b GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
140.3 99.9 GSM142755 MJ001_ATH1_A6-jones-RH-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
126.9 99.9 GSM157315 Hammond_3-5_Potassium-starved-root_Rep1_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
106.8 99.9 GSM157324 Hammond_3-17_Potassium-starved-root_Rep3_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
92.6 99.9 GSM142723 CH001_ATH1_A002-Hampt-aka GSE6161 Differential gene expression patterns in Arabidopsis mutants lacking the K+ channels, akt1, cngc1 and cngc4.
91.6 99.9 GSM157314 Hammond_3-4_Control-root_Rep1_ATH1 GSE6825 Differential gene expression patterns in potassium-starved and Caesium-treated plants
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.05 6e-16 85 At4g08770 826447 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:vacuole;POF C.G. S.X.
0.05 6e-16 85 At4g08780 826448 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:vacuole;POFM C.G. S.X.
0.08 6e-16 85 At1g14540 838016 anionic peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM C.G. S.X.
0.06 9e-12 71 At4g16270 827322 peroxidase 40 (PER40) (P40) F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOBM C.G. S.X.
0.04 2e-9 63 At3g49120 824073 PRXCB (PEROXIDASE CB) Class III peroxidase Perx34. Expressed in roots, leaves and stems. Located in the cell wall. Involved in cell elongation. Expression activated by light. May play a role in generating H2O2 during defense response. C.G. S.X.
0.04 9e-9 61 At3g49110 824072 PRXCA (PEROXIDASE CA) Class III peroxidase Perx33. Expressed in roots. Located in the cell wall. Involved in cell elongation. Expression activated by light. May play a role in generating H2O2 during defense response. C.G. S.X.
0.03 1e-7 57 At5g39580 833954 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:defense response to fungus, N-terminal protein myristoylation;C:endomembrane system;PFO C.G. S.X.
0.03 8e-6 52 At5g24070 832472 peroxidase family protein F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFOM C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.10 8e-10 65 Glycine max GmaAffx.50446.1.S1_at BQ080496 - - 3e-10 At5g19890 peroxidase, putative C.G. S.X.
0.02 4e-3 42 Hordeum vulgare Contig11509_at Contig11509 - - 4e-2 At1g44970 peroxidase, putative C.G. S.X.
0.05 2e-2 42 Oryza sativa Os03g0235000 D14482.1 - Peroxidase (EC 1.11.1.7) 7e-4 At5g66390 peroxidase 72 (PER72) (P72) (PRXR8) C.G. S.X.
0.07 2e-4 48 Populus trichocarpa PtpAffx.212942.1.S1_at pmrna25324 hypothetical protein - 1e-4 At5g19890 peroxidase, putative C.G. S.X.
0.03 5e-1 36 Triticum aestivum Ta.9900.1.S1_at BJ233995 - - 2e-1 At5g19890 peroxidase, putative C.G. S.X.
0.03 2e-7 56 Vitis vinifera 1614361_at CD799499 hypothetical protein LOC100242338 - 3e-8 At2g22420 peroxidase 17 (PER17) (P17) C.G. S.X.
0.03 2e-7 56 Zea mays Zm.404.1.S1_at AF037033.1 anionic peroxidase H - 8e-3 At5g66390 peroxidase 72 (PER72) (P72) (PRXR8) C.G. S.X.
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Biological processes

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ECC GO ID Process Name
L GO:0006979 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of oxidative stress, a state often resulting from exposure to high levels of reactive oxygen species, e.g. superoxide anions, hydrogen peroxide (H2O2), and hydroxyl radicals.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00413 Peroxidase, class III

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00360 Phenylalanine metabolism
00680 Methane metabolism
00940 Phenylpropanoid biosynthesis
01061 Biosynthesis of phenylpropanoids
01100 Metabolic pathways
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