CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g19850

Gene name hydrolase, alpha/beta fold family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.44 57.2 At5g19850 832105 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:unknown;C:unknown;BOMPFA S.X. H.G.
1.00 100.0 At1g78510 844187 SPS1 (solanesyl diphosphate synthase 1) Encodes a protein with solanesyl diphosphate synthase activity. S.X. H.G.
0.86 93.1 At1g17050 838275 SPS2 (Solanesyl diphosphate synthase 2) Encodes a protein with solanesyl diphosphate synthase activity. S.X. H.G.
0.86 93.1 At1g76570 843990 chlorophyll A-B binding family protein F:chlorophyll binding;P:response to blue light, response to far red light, photosynthesis;C:light-harvesting complex, chloroplast, membrane;POM S.X. H.G.
0.75 86.9 At3g24190 822005 ABC1 family protein F:protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:chloroplast;OBMPFAV S.X. H.G.
Click here to hide the above table.

Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
20.8 99.6 Evans_2-4_fab1-mut-cold_ATH1
17.0 99.5 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.9 99.5 E-MEXP-285-raw-cel-440782938
16.9 99.5 Evans_2-2_col-WT-cold_ATH1
16.9 99.5 Evans_2-8_35s-FAD3-cold_ATH1
16.8 99.5 GSM272988 flu, biological rep2 GSE10812 Expression data from thylakoidal ascorbate peroxidase overexpressor Arabidopsis thaliana (Col) rosette leaves
16.7 99.5 GSM143308 Tsu_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
16.6 99.5 GSM272986 WT Col, biological rep2 GSE10812 Expression data from thylakoidal ascorbate peroxidase overexpressor Arabidopsis thaliana (Col) rosette leaves
16.6 99.5 GSM297392 At.StarchSD.WTSS3.WTR1L1 GSE11708 Global gene expression in Atss3 mutant and WT over short day diurnal cycle
16.5 99.5 GSM253646 Low_Mo_seg_pool_Ler_col_F2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
Click here to hide the above table.

Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 5e-1 36 At1g52520 841683 FRS6 (FAR1-related sequence 6) F:zinc ion binding;P:response to red or far red light;C:cellular_component unknown;PFMO C.G. S.X.
0.01 2e+0 34 At4g24550 828557 clathrin adaptor complexes medium subunit family protein F:protein binding;P:intracellular protein transport, transport, vesicle-mediated transport;C:membrane coat, clathrin vesicle coat, clathrin adaptor complex;MFOP C.G. S.X.
0.02 2e+0 34 At4g09060 826484 unknown protein F:unknown;P:unknown;C:membrane;MOFBPAV C.G. S.X.
0.01 2e+0 34 At2g43680 818970 IQD14 F:calmodulin binding;P:unknown;C:plasma membrane;MBFOPVA C.G. S.X.
0.01 2e+0 34 At1g70740 843411 protein kinase family protein F:protein serine/threonine kinase activity, protein kinase activity, kinase activity, ATP binding;P:protein amino acid phosphorylation;C:cellular_component unknown;MPOBFVA C.G. S.X.
0.01 2e+0 34 At1g12740 837830 CYP87A2 encodes a protein with cytochrome P450 domain C.G. S.X.
0.02 8e+0 32 At5g18130 831931 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P C.G. S.X.
Click here to hide the above table.

Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.16 1e-11 71 Glycine max Gma.15872.2.S1_a_at BU764460 - - 9e-12 At5g19850 hydrolase, alpha/beta fold family protein C.G. S.X.
0.02 3e-1 36 Hordeum vulgare Contig17288_at Contig17288 - - 3e-1 At2g48120 PAC (PALE CRESS) C.G. S.X.
0.17 3e-7 57 Oryza sativa Os07g0575800 AK060302.1 - Conserved hypothetical protein 2e-7 At5g19850 hydrolase, alpha/beta fold family protein C.G. S.X.
0.22 1e-11 71 Populus trichocarpa PtpAffx.138621.2.S1_a_at AJ767138 hypothetical protein - 6e-12 At5g19850 hydrolase, alpha/beta fold family protein C.G. S.X.
0.04 4e-5 50 Triticum aestivum Ta.616.3.A1_at BG905901 - - 1e-5 At5g19850 hydrolase, alpha/beta fold family protein C.G. S.X.
0.02 2e-1 36 Vitis vinifera 1618154_at CF607911 hypothetical protein LOC100258219 - 3e-44 At4g24820 26S proteasome regulatory subunit, putative (RPN7) C.G. S.X.
0.02 4e+0 32 Zea mays ZmAffx.1301.1.S1_at 40794996-29 - - 2e-13 Atmg00180 - C.G. S.X.
Click here to hide the above table.

Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
Click here to hide the above table.

Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
Click here to hide the above table.

Back to the CoP portal site

Back to the KAGIANA project homepage