CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g19800

Gene name hydroxyproline-rich glycoprotein family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.67 81.6 At5g19800 832100 hydroxyproline-rich glycoprotein family protein F:unknown;P:biological_process unknown;C:endomembrane system;MPOFBVA S.X. H.G.
1.00 100.0 At2g20520 816574 FLA6 (FASCICLIN-LIKE ARABINOGALACTAN 6) fasciclin-like arabinogalactan-protein 6 (Fla6) S.X. H.G.
1.00 100.0 At5g22410 832302 peroxidase, putative F:electron carrier activity, peroxidase activity, heme binding;P:response to oxidative stress;C:endomembrane system;PFO S.X. H.G.
1.00 100.0 At5g57540 835858 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:endomembrane system, apoplast, cell wall;PFBO S.X. H.G.
0.91 95.6 At1g54970 841938 ATPRP1 (PROLINE-RICH PROTEIN 1) encodes a proline-rich protein that is specifically expressed in the root. S.X. H.G.
0.91 95.6 At5g57530 835857 xyloglucan:xyloglucosyl transferase, putative / xyloglucan endotransglycosylase, putative / endo-xyloglucan transferase, putative F:hydrolase activity, acting on glycosyl bonds, xyloglucan:xyloglucosyl transferase activity, hydrolase activity, hydrolyzing O-glycosyl compounds;P:carbohydrate metabolic process, cellular glucan metabolic process;C:cell wall, cytoplasm;PFBO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
581.9 100.0 GSM142751 MJ001_ATH1_A2-jones-WT2 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
542.8 100.0 GSM142750 MJ001_ATH1_A1-jones-WT1 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
291.9 100.0 GSM142754 MJ001_ATH1_A5-jones-WT-Rep3 GSE6165 The effect of mutations in AtrbohC on the pattern of gene expression in primary root tissue.
96.2 99.9 GSM184837 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7 GSE7639 Expression analysis of root developmental zones after treatment with salt
82.4 99.9 E-MEXP-722-raw-cel-1062243470
64.0 99.8 GSM133283 RIKEN-GODA4A-M GSE5697 AtGenExpress: Comparison of plant hormone-related mutants
59.3 99.8 GSM184838 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 8 GSE7639 Expression analysis of root developmental zones after treatment with salt
58.7 99.8 E-MEXP-722-raw-cel-1062243559
58.4 99.8 GSM157306 Gan_1-3_wildtype-nitrate-minus(WNM)_Rep2_ATH1 GSE6824 Identification of genes involved in nutritional regulation of root architecture
54.6 99.8 GSM157305 Gan_1-1_wildtype-nitrate-minus(WNM)_Rep1_ATH1 GSE6824 Identification of genes involved in nutritional regulation of root architecture
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Homologous genes

Paralogous genes

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HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.34 8e-28 123 At5g19810 832101 proline-rich extensin-like family protein F:unknown;P:unknown;C:endomembrane system;MBPOFVA C.G. S.X.
0.14 2e-9 61 At5g26070 832676 hydroxyproline-rich glycoprotein family protein Encodes a protein with 23.5% proline residues and proline-rich extensin domains, INTERPRO:IPR002965; similar to root nodule extensin (Pisum sativum) gi:15021750/gb:AAK77902; Common family members: At5g19800, At5g57070, At1g72790 (Arabidopsis thaliana) C.G. S.X.
0.26 4e-8 57 At3g20850 821633 proline-rich family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;MPBOFVA C.G. S.X.
0.19 1e-7 56 At5g26080 832677 proline-rich family protein F:unknown;P:unknown;C:endomembrane system;MPBOFVA C.G. S.X.
0.03 4e-2 38 At4g39720 830127 VQ motif-containing protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;OPMF C.G. S.X.
0.02 1e-1 36 At4g29230 829044 anac075 (Arabidopsis NAC domain containing protein 75) F:transcription factor activity;P:multicellular organismal development, regulation of transcription;C:unknown;PMOFBV C.G. S.X.
0.02 1e-1 36 At1g08520 837374 CHLD F:magnesium chelatase activity, nucleoside-triphosphatase activity, nucleotide binding, ATP binding;P:chlorophyll biosynthetic process;C:magnesium chelatase complex, chloroplast;MOBFPVA C.G. S.X.
0.02 5e-1 34 At4g11660 826771 AT-HSFB2B member of Heat Stress Transcription Factor (Hsf) family C.G. S.X.
0.04 5e-1 34 At4g16563 827356 aspartyl protease family protein F:aspartic-type endopeptidase activity;P:proteolysis;C:plant-type cell wall;PMFO C.G. S.X.
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Orthologous genes

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HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.05 8e-1 34 Glycine max GmaAffx.41708.1.S1_s_at BG046159 - - 5e-2 At1g12810 proline-rich family protein C.G. S.X.
0.06 3e-1 34 Hordeum vulgare Contig1529_at Contig1529 - - 3e-24 At3g61470 LHCA2 C.G. S.X.
0.04 3e-1 36 Oryza sativa Os01g0798200 AK067900.1 - Conserved hypothetical protein 2e+0 At5g19800 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.04 3e+0 32 Populus trichocarpa PtpAffx.249.633.A1_x_at CV259819 - - 1e-9 At2g21660 CCR2 (COLD, CIRCADIAN RHYTHM, AND RNA BINDING 2) C.G. S.X.
0.05 1e-1 36 Triticum aestivum TaAffx.2446.3.S1_at CA645903 - - 2e-1 At5g19800 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.04 2e-1 34 Vitis vinifera 1609901_at CF212785 hypothetical protein LOC100263137 - 2e+0 At5g19800 hydroxyproline-rich glycoprotein family protein C.G. S.X.
0.05 2e-1 34 Zea mays ZmAffx.967.1.S1_s_at AI668376 Hypothetical protein LOC100193584 - 1e+1 At5g29613 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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