CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g19690

Gene name STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.30 32.1 At5g19690 832089 STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A) encodes an oligosaccharyl transferase involved response to high salt. Mutants are hypersensitive to high salt conditions S.X. H.G.
0.75 86.9 At2g47470 819360 UNE5 (UNFERTILIZED EMBRYO SAC 5) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response. S.X. H.G.
0.67 81.6 At5g10840 830951 endomembrane protein 70, putative F:unknown;P:unknown;C:integral to membrane, Golgi apparatus, plasma membrane, plant-type cell wall;MPOFB S.X. H.G.
0.57 73.8 At2g32920 817854 ATPDIL2-3 (PDI-LIKE 2-3) Encodes a protein disulfide isomerase-like (PDIL) protein, a member of a multigene family within the thioredoxin (TRX) superfamily. Transcript levels for this gene are up-regulated in response to three different chemical inducers of ER stress (dithiothreitol, beta-mercaptoethanol, and tunicamycin). AtIRE1-2 does not appear to be required for this response, but the atbzip60 mutant has a diminished response. S.X. H.G.
0.32 35.7 At2g21160 816651 translocon-associated protein alpha (TRAP alpha) family protein F:unknown;P:biological_process unknown;C:chloroplast thylakoid membrane, endoplasmic reticulum, plasma membrane, vacuole;MPFO S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
14.0 99.4 GSM133979 Birnbaum_1-9_StageII-2_Rep2_ATH1 GSE5749 A gene expression map of the Arabidopsis root
13.7 99.4 GSM184833 Arabidopsis, root, longitudinal zone 2, standard conditions, replicate 3 GSE7639 Expression analysis of root developmental zones after treatment with salt
12.9 99.3 GSM265411 Arabidopsis, whole roots, -Fe, replicate 1 GSE10496 Expression analysis of the effect of protoplasting and FACS sorting in roots exposed to iron deficiency (-Fe)
12.8 99.3 GSM265428 Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 1 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
12.5 99.3 GSM266664 Arabidopsis, root cells, epidermis and lateral root cap, -Fe, replicate 3 GSE10501 Expression analysis of root cell-types after iron deficiency (-Fe) treatment
12.4 99.3 GSM265429 Arabidopsis, root, longitudinal zone 2, -Fe conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
11.2 99.2 GSM184834 Arabidopsis, root, longitudinal zone 2, standard conditions, replicate 4 GSE7639 Expression analysis of root developmental zones after treatment with salt
11.0 99.2 GSM133978 Birnbaum_1-8_StageII-1_Rep1_ATH1 GSE5749 A gene expression map of the Arabidopsis root
10.7 99.2 GSM184902 Arabidopsis, root cells, stele, standard conditions, replicate 2 GSE7641 Expression analysis of root cell-types after treatment with salt
10.6 99.2 GSM265421 Arabidopsis, root, longitudinal zone 2, standard conditions, rep 2 GSE10497 Expression analysis of root developmental zones after iron deficiency (-Fe) treatment
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.08 3e-4 48 At1g34130 840312 STT3B (staurosporin and temperature sensitive 3-like b) Encodes homolog of yeast STT3, a subunit of oligosaccharyltransferase. C.G. S.X.
0.01 7e-2 40 At3g04580 819614 EIN4 (ETHYLENE INSENSITIVE 4) Ethylene receptor, subfamily 2. Has serine kinase activity. C.G. S.X.
0.01 3e-1 38 At5g13110 831150 G6PD2 (GLUCOSE-6-PHOSPHATE DEHYDROGENASE 2) Encodes a plastidic glucose-6-phosphate dehydrogenase that is sensitive to reduction by DTT and whose mRNA is most highly expressed in root. C.G. S.X.
0.01 3e-1 38 At5g46210 834663 CUL4 (CULLIN4) Arabidopsis CULLIN4 (CUL4) forms an E3 ubiquitin ligase with the CDD complex and a common catalytic subunit RBX1 in mediating light control of development. This CUL4-based E3 ligase is essential for the repression of photomorphogenesis. The partial loss of CUL4 function resulted in a constitutive photomorphogenic phenotype with respect to morphogenesis and light-regulated gene expression. CUL4 exhibits a synergistic genetic interaction with COP10 and DET1. C.G. S.X.
0.00 1e+0 36 At4g02660 828210 WD-40 repeat family protein / beige-related F:binding;P:signal transduction;C:chloroplast;MBOFPA C.G. S.X.
0.01 1e+0 36 At4g34400 829590 DNA binding / transcription factor F:transcription factor activity, DNA binding;P:regulation of transcription, DNA-dependent;C:endomembrane system;MOBFPVA C.G. S.X.
0.01 1e+0 36 At3g51310 824294 VPS35C (VPS35 HOMOLOG C) Homolog of yeast retromer subunit VPS35. Part of a retromer-like protein complex involved in endosome to lysosome protein transport. C.G. S.X.
0.01 1e+0 36 At3g01970 821270 WRKY45 member of WRKY Transcription Factor; Group I C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.32 5e-96 353 Glycine max Gma.6390.1.S1_at BE211757 - - 2e-96 At5g19690 STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A) C.G. S.X.
0.38 1e-79 297 Hordeum vulgare Contig9420_at Contig9420 - - 1e-79 At5g19690 STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A) C.G. S.X.
0.50 3e-80 301 Oryza sativa Os05g0519900 AK070919.1 - Oligosaccharyl transferase STT3 subunit 1e-80 At5g19690 STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A) C.G. S.X.
0.28 5e-47 190 Populus trichocarpa PtpAffx.54580.1.S1_at DN487058 hypothetical protein - 1e-47 At5g19690 STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A) C.G. S.X.
0.29 1e-65 252 Triticum aestivum Ta.9644.1.S1_at CA647791 - - 7e-66 At5g19690 STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A) C.G. S.X.
0.26 1e-84 313 Vitis vinifera 1618013_at CF519167 oligosaccharyl transferase STT3 protein-like - 7e-77 At5g19690 STT3A (STAUROSPORIN AND TEMPERATURE SENSITIVE 3-LIKE A) C.G. S.X.
0.07 8e-6 52 Zea mays Zm.3652.1.A1_at CO529950 - - 5e-79 At1g34130 STT3B (staurosporin and temperature sensitive 3-like b) C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
X GO:0009651 A change in state or activity of a cell or an organism (in terms of movement, secretion, enzyme production, gene expression, etc.) as a result of a stimulus indicating an increase or decrease in the concentration of salt (particularly but not exclusively sodium and chloride ions) in the environment.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name
00359 Glucosyltransferase

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
00510 N-Glycan biosynthesis
01100 Metabolic pathways
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