Gene omics information

Query gene ID At5g19540
Gene name unknown protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.8793.5At5g19540832074unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;POBS.X.H.G.
0.7989.1At1g54520841894unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPOMS.X.H.G.
0.6781.6At4g25650828670ACD1-LIKE (ACD1-LIKE)Similar to ACD1. Leaves of antisense ACD1-like plants turn yellow in darkness like wild-type whereas antisense ACD1 plants remain dark after five days of dark treatment.S.X.H.G.
0.6680.1At5g48590834916unknown proteinF:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBOS.X.H.G.
0.6680.1At5g02790831798In2-1 protein, putativeF:unknown;P:response to cadmium ion;C:unknown;PBMOFAS.X.H.G.
0.6277.3At1g67280843048lactoylglutathione lyase, putative / glyoxalase I, putativeF:lactoylglutathione lyase activity, metal ion binding;P:response to cold, carbohydrate metabolic process;C:thylakoid, thylakoid lumen, stromule, chloroplast, chloroplast stroma;BOMFPAS.X.H.G.
0.6176.7At1g767308440075-formyltetrahydrofolate cyclo-ligase family proteinF:catalytic activity, ATP binding, 5-formyltetrahydrofolate cyclo-ligase activity;P:folic acid and derivative biosynthetic process, metabolic process;C:chloroplast;MBAOPFS.X.H.G.
0.6176.7At4g37200829874HCF164Encodes thioredoxin-like protein with disulfide reductase activity that is involved in the biogenesis of the plastid cytochrome b6f complex. Protein is located in the thylakoid membrane with the C-terminal hydrophilic portion, containing the thioredoxin like domain, extending into the thylakoid lumen.S.X.H.G.
0.5974.7At1g02475839236-F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOPS.X.H.G.
0.5873.8At3g27925822416DEGP1 (DegP protease 1)Encodes a DegP protease; nuclear gene encoding chloroplast-targeted protease that can degrade two lumenal proteins, plastocyanin and OE33, suggesting a role as a general-purpose protease in the thylakoid lumen. Involved in the degradation of D1 protein of PS II, hence participating in the repair of PS II damages caused by photoinhibition.S.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
17.499.5E-ATMX-32-raw-cel-1562974681
15.599.5E-ATMX-32-raw-cel-1562974595
14.299.4E-ATMX-32-raw-cel-1562974621
11.799.3E-ATMX-32-raw-cel-1562974409
9.799.1E-ATMX-32-raw-cel-1562974504
8.198.9E-MEXP-1454-raw-cel-1585858071
8.198.9GSM269813WT leaf-drought-rep1GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
7.898.9GSM269831T6 leaf-drought-rep3GSE10670Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
7.598.8GSM38670DSNPGSE2268Arabidopsis polysome microarray
7.498.8GSM133786Brueggemann_A-4-Brueg-PpH_SLDGSE5731UV-B Responses in Light Grown Plants: Similarities to Biotic Stress
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.013e-344At5g38840833875forkhead-associated domain-containing protein / FHA domain-containing proteinF:molecular_function unknown;P:biological_process unknown;C:membrane;MOBFPAVC.G.S.X.
0.011e-242At5g52400835316CYP715A1member of CYP715AC.G.S.X.
0.024e-240At3g42180823191catalytic/ transferase, transferring glycosyl groupsF:transferase activity, transferring glycosyl groups, catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;PMOBFC.G.S.X.
0.012e-138At5g66310836763kinesin motor family proteinF:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPBVAC.G.S.X.
0.012e-138At5g46170834659F-box family proteinF:molecular_function unknown;P:heat acclimation;C:cellular_component unknown;PC.G.S.X.
0.012e-138At3g01780821081TPLATEEncodes TPLATE, a cytokinesis protein targeted to the cell plate. Functions in vesicle-trafficking events required for site-specific cell wall modifications during pollen germination and for anchoring of the cell plate to the mother wall at the correct cortical position.C.G.S.X.
0.022e-138At1g23070838915unknown proteinF:unknown;P:biological_process unknown;C:unknown;MPFOC.G.S.X.
0.017e-136At5g19310832051homeotic gene regulator, putativeF:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVAC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.193e-1377Glycine maxGmaAffx.78534.1.S1_atBQ297217--8e-14At5g19540unknown proteinC.G.S.X.
0.039e-238Hordeum vulgareContig12805_atContig12805--1e-1At5g19540unknown proteinC.G.S.X.
0.021e+036Oryza sativaOsAffx.4219.1.S1_at---0C.G.S.X.
0.124e-963Populus trichocarpaPtpAffx.3690.1.A1_atBP930659hypothetical protein-2e-9At5g19540unknown proteinC.G.S.X.
0.025e-240Triticum aestivumTa.17068.2.S1_a_atCA742333--2e-2At5g19540unknown proteinC.G.S.X.
0.023e+032Vitis vinifera1617756_atCB981493hypothetical protein LOC100253194-2e+1At5g57560TCH4 (Touch 4)C.G.S.X.
0.075e-342Zea maysZm.15331.1.S1_atCB350880hypothetical protein LOC100275547-5e-3At5g19540unknown proteinC.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
NGO:0008150Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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