CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g19540

Gene name unknown protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.87 93.5 At5g19540 832074 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;POB S.X. H.G.
0.79 89.1 At1g54520 841894 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BPOM S.X. H.G.
0.67 81.6 At4g25650 828670 ACD1-LIKE (ACD1-LIKE) Similar to ACD1. Leaves of antisense ACD1-like plants turn yellow in darkness like wild-type whereas antisense ACD1 plants remain dark after five days of dark treatment. S.X. H.G.
0.66 80.1 At5g48590 834916 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;PBO S.X. H.G.
0.66 80.1 At5g02790 831798 In2-1 protein, putative F:unknown;P:response to cadmium ion;C:unknown;PBMOFA S.X. H.G.
0.62 77.3 At1g67280 843048 lactoylglutathione lyase, putative / glyoxalase I, putative F:lactoylglutathione lyase activity, metal ion binding;P:response to cold, carbohydrate metabolic process;C:thylakoid, thylakoid lumen, stromule, chloroplast, chloroplast stroma;BOMFPA S.X. H.G.
0.61 76.7 At1g76730 844007 5-formyltetrahydrofolate cyclo-ligase family protein F:catalytic activity, ATP binding, 5-formyltetrahydrofolate cyclo-ligase activity;P:folic acid and derivative biosynthetic process, metabolic process;C:chloroplast;MBAOPF S.X. H.G.
0.61 76.7 At4g37200 829874 HCF164 Encodes thioredoxin-like protein with disulfide reductase activity that is involved in the biogenesis of the plastid cytochrome b6f complex. Protein is located in the thylakoid membrane with the C-terminal hydrophilic portion, containing the thioredoxin like domain, extending into the thylakoid lumen. S.X. H.G.
0.59 74.7 At1g02475 839236 - F:molecular_function unknown;P:biological_process unknown;C:chloroplast;BOP S.X. H.G.
0.58 73.8 At3g27925 822416 DEGP1 (DegP protease 1) Encodes a DegP protease; nuclear gene encoding chloroplast-targeted protease that can degrade two lumenal proteins, plastocyanin and OE33, suggesting a role as a general-purpose protease in the thylakoid lumen. Involved in the degradation of D1 protein of PS II, hence participating in the repair of PS II damages caused by photoinhibition. S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
17.4 99.5 E-ATMX-32-raw-cel-1562974681
15.5 99.5 E-ATMX-32-raw-cel-1562974595
14.2 99.4 E-ATMX-32-raw-cel-1562974621
11.7 99.3 E-ATMX-32-raw-cel-1562974409
9.7 99.1 E-ATMX-32-raw-cel-1562974504
8.1 98.9 E-MEXP-1454-raw-cel-1585858071
8.1 98.9 GSM269813 WT leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
7.8 98.9 GSM269831 T6 leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
7.5 98.8 GSM38670 DSNP GSE2268 Arabidopsis polysome microarray
7.4 98.8 GSM133786 Brueggemann_A-4-Brueg-PpH_SLD GSE5731 UV-B Responses in Light Grown Plants: Similarities to Biotic Stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 3e-3 44 At5g38840 833875 forkhead-associated domain-containing protein / FHA domain-containing protein F:molecular_function unknown;P:biological_process unknown;C:membrane;MOBFPAV C.G. S.X.
0.01 1e-2 42 At5g52400 835316 CYP715A1 member of CYP715A C.G. S.X.
0.02 4e-2 40 At3g42180 823191 catalytic/ transferase, transferring glycosyl groups F:transferase activity, transferring glycosyl groups, catalytic activity;P:biological_process unknown;C:endomembrane system, membrane;PMOBF C.G. S.X.
0.01 2e-1 38 At5g66310 836763 kinesin motor family protein F:microtubule motor activity, ATP binding;P:microtubule-based movement;C:microtubule associated complex;MOFPBVA C.G. S.X.
0.01 2e-1 38 At5g46170 834659 F-box family protein F:molecular_function unknown;P:heat acclimation;C:cellular_component unknown;P C.G. S.X.
0.01 2e-1 38 At3g01780 821081 TPLATE Encodes TPLATE, a cytokinesis protein targeted to the cell plate. Functions in vesicle-trafficking events required for site-specific cell wall modifications during pollen germination and for anchoring of the cell plate to the mother wall at the correct cortical position. C.G. S.X.
0.02 2e-1 38 At1g23070 838915 unknown protein F:unknown;P:biological_process unknown;C:unknown;MPFO C.G. S.X.
0.01 7e-1 36 At5g19310 832051 homeotic gene regulator, putative F:helicase activity, DNA binding, ATP binding, nucleic acid binding;P:biological_process unknown;C:cellular_component unknown;MOFBPVA C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.19 3e-13 77 Glycine max GmaAffx.78534.1.S1_at BQ297217 - - 8e-14 At5g19540 unknown protein C.G. S.X.
0.03 9e-2 38 Hordeum vulgare Contig12805_at Contig12805 - - 1e-1 At5g19540 unknown protein C.G. S.X.
0.02 1e+0 36 Oryza sativa OsAffx.4219.1.S1_at - - - 0 C.G. S.X.
0.12 4e-9 63 Populus trichocarpa PtpAffx.3690.1.A1_at BP930659 hypothetical protein - 2e-9 At5g19540 unknown protein C.G. S.X.
0.02 5e-2 40 Triticum aestivum Ta.17068.2.S1_a_at CA742333 - - 2e-2 At5g19540 unknown protein C.G. S.X.
0.02 3e+0 32 Vitis vinifera 1617756_at CB981493 hypothetical protein LOC100253194 - 2e+1 At5g57560 TCH4 (Touch 4) C.G. S.X.
0.07 5e-3 42 Zea mays Zm.15331.1.S1_at CB350880 hypothetical protein LOC100275547 - 5e-3 At5g19540 unknown protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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