CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g19500

Gene name tryptophan/tyrosine permease family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.92 96.0 At5g19500 832070 tryptophan/tyrosine permease family protein F:amine transmembrane transporter activity;P:amino acid transport;C:membrane;BOPAMF S.X. H.G.
0.56 73.0 At3g56160 824782 bile acid:sodium symporter F:bile acid:sodium symporter activity;P:sodium ion transport;C:chloroplast, chloroplast envelope;BOMPFA S.X. H.G.
0.52 67.4 At1g06240 837134 unknown protein F:unknown;P:biological_process unknown;C:unknown;BOPFM S.X. H.G.
0.50 65.3 At4g05090 825853 inositol monophosphatase family protein F:3'(2'),5'-bisphosphate nucleotidase activity, inositol or phosphatidylinositol phosphatase activity;P:sulfur metabolic process;C:chloroplast;BOFPMA S.X. H.G.
0.44 57.2 At3g21580 821712 cobalt ion transmembrane transporter F:cobalt ion transmembrane transporter activity;P:cobalt ion transport, cobalamin biosynthetic process;C:chloroplast;BOPA S.X. H.G.
0.42 53.9 At5g06790 830569 unknown protein F:molecular_function unknown;P:biological_process unknown;C:chloroplast;P S.X. H.G.
0.40 50.8 At1g29530 839830 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PMFOBA S.X. H.G.
0.40 50.8 At1g49010 841324 myb family transcription factor F:transcription factor activity, DNA binding;P:in 6 processes;C:unknown;PMOFBV S.X. H.G.
0.38 46.7 At3g26630 822275 pentatricopeptide (PPR) repeat-containing protein F:unknown;P:biological_process unknown;C:unknown;POFM S.X. H.G.
0.37 45.0 At3g22104 821773 phototropic-responsive NPH3 protein-related F:protein binding, signal transducer activity;P:response to light stimulus;C:unknown;PMOBF S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
295.1 100.0 GSM133760 Lindsey_1-12_heart-stage-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
76.6 99.9 GSM184556 Whole roots 2hr KNO3 treated then incubated in protoplast-generating solution minus enzymes, biological rep2 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
29.0 99.7 GSM133762 Lindsey_1-14_torpedo-root_Rep1_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
27.6 99.7 GSM184551 Whole roots 2hr KCl control treated then incubated in protoplast-generating solution minus enzymes, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
17.0 99.5 GSM176878 AWP_AL_Txed_2 GSE7334 Microarray Analysis of Arabidopsis Genome Response to Aluminum Stress
16.1 99.5 GSM133768 Lindsey_1-20_torpedo-basal_Rep5_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
15.4 99.5 GSM133766 Lindsey_1-18_torpedo-root_Rep3_ATH1 GSE5730 Transcriptional profiling of laser-capture micro-dissected embryonic tissues
15.0 99.4 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
11.8 99.3 GSM184537 Whole roots 2hr KCl control treated then frozen, biological rep1 GSE7631 Cell-specific nitrogen responses in the Arabidopsis root
11.7 99.3 GSM133819 Yang_1-4_old-pod_Rep2_ATH1 GSE5736 To identify changes in gene expression during silique senescence in Arabidopsis thaliana
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.01 2e-1 38 At5g10800 830947 RNA recognition motif (RRM)-containing protein F:RNA binding, nucleotide binding, nucleic acid binding;P:RNA processing;C:cellular_component unknown;MOFPBVA C.G. S.X.
0.01 8e-1 36 At4g33020 829439 ZIP9 member of Fe(II) transporter isolog family C.G. S.X.
0.02 3e+0 34 At5g55460 835639 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:endomembrane system;P C.G. S.X.
0.02 3e+0 34 At5g22990 832363 zinc finger (C2H2 type) family protein F:transcription factor activity, zinc ion binding, nucleic acid binding;P:regulation of transcription;C:intracellular;PMO C.G. S.X.
0.01 3e+0 34 At5g52570 835334 BETA-OHASE 2 (BETA-CAROTENE HYDROXYLASE 2) Converts β-carotene to zeaxanthin via cryptoxanthin. C.G. S.X.
0.01 3e+0 34 At4g33010 829438 AtGLDP1 (Arabidopsis thaliana glycine decarboxylase P-protein 1) F:glycine dehydrogenase (decarboxylating) activity, pyridoxal phosphate binding, catalytic activity;P:glycine catabolic process, glycine decarboxylation via glycine cleavage system;C:mitochondrion, apoplast, glycine cleavage complex, chloroplast, chloroplast envelope;OBFAMP C.G. S.X.
0.01 3e+0 34 At4g26660 828773 - F:unknown;P:biological_process unknown;C:chloroplast;MOFBPAV C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 4e+0 34 Glycine max GmaAffx.81457.1.S1_s_at BF596737 - - 3e+0 At3g44590 60S acidic ribosomal protein P2 (RPP2D) C.G. S.X.
0.09 7e-12 71 Hordeum vulgare Contig10597_at Contig10597 - - 2e-11 At5g19500 tryptophan/tyrosine permease family protein C.G. S.X.
0.10 2e-6 56 Oryza sativa Os07g0662800 AK066067.1 - Aromatic amino acid permease family protein 1e-6 At5g19500 tryptophan/tyrosine permease family protein C.G. S.X.
0.38 1e-24 115 Populus trichocarpa PtpAffx.200547.1.S1_at pmrna1085 hypothetical protein - 8e-25 At5g19500 tryptophan/tyrosine permease family protein C.G. S.X.
0.09 2e-7 57 Triticum aestivum Ta.15656.1.A1_at CA486069 - - 9e-8 At5g19500 tryptophan/tyrosine permease family protein C.G. S.X.
0.02 4e+0 32 Vitis vinifera 1619739_at CB341962 hypothetical protein LOC100265726 - 1e-3 At2g39270 adenylate kinase family protein C.G. S.X.
0.02 5e+0 32 Zea mays Zm.6234.2.A1_at AI881460 - - 8e-7 At2g30110 ATUBA1 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
C GO:0006865 The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of, within or between cells.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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