CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g19460

Gene name atnudt20 (Arabidopsis thaliana Nudix hydrolase homolog 20)

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.36 43.6 At5g19460 832066 atnudt20 (Arabidopsis thaliana Nudix hydrolase homolog 20) F:hydrolase activity;P:biological_process unknown;C:chloroplast;BFOMP S.X. H.G.
0.83 91.4 At1g56650 842120 PAP1 (PRODUCTION OF ANTHOCYANIN PIGMENT 1) Encodes a putative MYB domain containing transcription factor involved in anthocyanin metabolism and radical scavenging. Essential for the sucrose-mediated expression of the dihydroflavonol reductase gene. S.X. H.G.
0.83 91.4 At5g54060 835489 UF3GT (udp-glucose:flavonoid 3-O-glucosyltransferase) F:transferase activity, transferring glycosyl groups;P:N-terminal protein myristoylation, response to sucrose stimulus;C:cellular_component unknown;PMBVFO S.X. H.G.
0.73 85.5 At1g03495 3766646 transferase/ transferase, transferring acyl groups other than amino-acyl groups F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:unknown;PF S.X. H.G.
0.73 85.5 At4g14090 827046 UDP-glucoronosyl/UDP-glucosyl transferase family protein The At4g14090 encodes a anthocyanidin 5-O-glucosyltransferase specifically glucosylating the 5-position of the flavonoid A-ring. S.X. H.G.
0.71 84.2 At4g22870 828386 leucoanthocyanidin dioxygenase, putative / anthocyanidin synthase, putative F:oxidoreductase activity;P:unknown;C:cellular_component unknown;POBFM S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
310.0 100.0 GSM269815 T6 leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
277.7 100.0 GSM269831 T6 leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
275.3 100.0 GSM269833 T8 leaf-drought-rep3 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
256.6 100.0 GSM269825 T8 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
214.7 100.0 GSM269823 T6 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
213.0 100.0 GSM269817 T8 leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
184.4 100.0 GSM269822 T6 leaf-well watered-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
169.7 100.0 GSM269827 C2 leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
146.1 99.9 GSM269819 C2 leaf-drought-rep1 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
145.7 99.9 GSM269821 WT leaf-drought-rep2 GSE10670 Global expression profiling of wild type and transgenic Arabidopsis plants in response to water stress
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.75 0 735 At5g19470 832067 atnudt24 (Arabidopsis thaliana Nudix hydrolase homolog 24) F:hydrolase activity;P:biological_process unknown;C:chloroplast;BFOMP C.G. S.X.
0.02 1e-1 38 At3g01800 821076 ribosome recycling factor family protein / ribosome releasing factor family protein F:unknown;P:translation;C:mitochondrion;BOMPF C.G. S.X.
0.02 6e-1 36 At5g54700 835559 ankyrin repeat family protein F:protein binding;P:biological_process unknown;C:cellular_component unknown;PMOBF C.G. S.X.
0.01 6e-1 36 At3g13100 820498 ATMRP7 member of MRP subfamily C.G. S.X.
0.02 6e-1 36 At3g17880 821056 ATTDX (TETRATICOPEPTIDE DOMAIN-CONTAINING THIOREDOXIN) Encodes a thioredoxin-like disulfide reductase. The protein interacts with the yeast Hsp70 protein Ssb2 in vitro. This interaction is sensitive to the redox status of the thioredoxin domain of AtTDX. C.G. S.X.
0.02 6e-1 36 At1g60280 842323 ANAC023 (Arabidopsis NAC domain containing protein 23) F:transcription factor activity;P:regulation of transcription;C:cellular_component unknown;P C.G. S.X.
0.02 6e-1 36 At1g77610 844096 glucose-6-phosphate/phosphate translocator-related F:organic anion transmembrane transporter activity;P:unknown;C:membrane;PMFOBA C.G. S.X.
0.02 2e+0 34 At5g49020 834961 PRMT4A (PROTEIN ARGININE METHYLTRANSFERASE 4A) Encodes a type I protein arginine methyltransferase. PRMT4a can catalyze the asymmetric dimethylation of arginines 2,17, and 26 on histone 3 and can also methylate myelin basic protein in vitro. Double mutants lacking PRMT4a and 4b have reduced levels of histone 3 methylated at R17. These double mutants flower late due to defects in the autonomous pathway and they have elevated levels of FLC transcripts. C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.15 3e-9 63 Glycine max GmaAffx.32826.2.S1_at BM884960 - - 1e-9 At5g19460 atnudt20 (Arabidopsis thaliana Nudix hydrolase homolog 20) C.G. S.X.
0.10 3e-10 65 Hordeum vulgare Contig15947_at Contig15947 - - 3e-6 At5g19470 atnudt24 (Arabidopsis thaliana Nudix hydrolase homolog 24) C.G. S.X.
0.10 1e-3 46 Oryza sativa Os09g0322200 AK067539.1 - NUDIX hydrolase domain containing protein 8e-4 At5g19460 atnudt20 (Arabidopsis thaliana Nudix hydrolase homolog 20) C.G. S.X.
0.26 4e-21 103 Populus trichocarpa PtpAffx.216981.1.S1_x_at pmrna32072 hypothetical protein - 2e-21 At5g19460 atnudt20 (Arabidopsis thaliana Nudix hydrolase homolog 20) C.G. S.X.
0.10 4e-5 50 Triticum aestivum TaAffx.92508.1.S1_at BJ261740 - - 3e-5 At5g19460 atnudt20 (Arabidopsis thaliana Nudix hydrolase homolog 20) C.G. S.X.
0.03 2e-1 36 Vitis vinifera 1620789_s_at CF414942 hypothetical protein LOC100249845 - 8e-1 At5g22520 unknown protein C.G. S.X.
0.02 4e+0 32 Zea mays Zm.6976.1.A1_at AI065892 - - 8e+0 At5g24314 PTAC7 C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
N GO:0008150 Any process specifically pertinent to the functioning of integrated living units: cells, tissues, organs, and organisms. A process is a collection of molecular events with a defined beginning and end.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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