Gene omics information

Query gene ID At5g19420
Gene name Ran GTPase binding / chromatin binding / zinc ion binding
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.3643.6At5g19420832062Ran GTPase binding / chromatin binding / zinc ion bindingF:chromatin binding, zinc ion binding, Ran GTPase binding;P:unknown;C:unknown;MOPBFAVS.X.H.G.
0.8693.1At1g22870838892protein kinase family proteinF:in 6 functions;P:protein amino acid phosphorylation;C:cellular_component unknown;MOFPBVAS.X.H.G.
0.8089.8At5g64390836560HEN4 (HUA ENHANCER 4)encodes a K homology (KH) domain-containing, putative RNA binding protein that interacts with HUA1, a CCCH zinc finger RNA binding protein in the nucleus. HEN4 acts redundantly with HUA1 and HUA2 in the specification of floral organ identity in the third whorl.S.X.H.G.
0.6075.7At5g185252745988ATP binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinaseF:protein serine/threonine kinase activity, protein tyrosine kinase activity, protein kinase activity, ATP binding;P:protein amino acid phosphorylation;C:CUL4 RING ubiquitin ligase complex;BMFOPAS.X.H.G.
0.3133.8At2g41020818702WW domain-containing proteinF:protein binding;P:biological_process unknown;C:cellular_component unknown;MOFPS.X.H.G.
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Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
68.299.9GSM253646Low_Mo_seg_pool_Ler_col_F2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
67.799.9GSM184537Whole roots 2hr KCl control treated then frozen, biological rep1GSE7631Cell-specific nitrogen responses in the Arabidopsis root
53.799.8GSM143308Tsu_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
49.799.8GSM143306High_Na_seg_pool_tsu_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
46.499.8GSM143298Low_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
45.999.8GSM143299High_Na_seg_pool_ts_col_F2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
44.699.8GSM143309Tsu_genomic_hyb_2GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
42.099.8GSM253649Col-0-2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
40.899.8GSM143310Tsu_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
40.599.8GSM253651Ler 1GSE10039Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.8202450At5g12350831110Ran GTPase binding / chromatin binding / zinc ion bindingF:chromatin binding, zinc ion binding, Ran GTPase binding;P:unknown;C:plasma membrane;MOBPFAVC.G.S.X.
0.098e-1583At5g42140834219zinc finger protein, putative / regulator of chromosome condensation (RCC1) family proteinF:chromatin binding, phosphoinositide binding, zinc ion binding, Ran GTPase binding;P:signal transduction;C:unknown;MOPBFAVC.G.S.X.
0.024e-757At4g14370827081phosphoinositide bindingF:phosphoinositide binding;P:signal transduction, defense response;C:intrinsic to membrane;PMOBFVAC.G.S.X.
0.022e-346At3g47660823920Ran GTPase binding / chromatin binding / zinc ion bindingF:chromatin binding, zinc ion binding, Ran GTPase binding;P:unknown;C:unknown;MOBPFAVC.G.S.X.
0.082e-346At1g69710843307zinc finger protein, putative / regulator of chromosome condensation (RCC1) family proteinF:chromatin binding, zinc ion binding, Ran GTPase binding;P:unknown;C:cellular_component unknown;MOBPFAVC.G.S.X.
0.013e-242At1g54180841858BRX-LIKE3 (BREVIS RADIX-LIKE 3)Belongs to five-member BRX gene family. Arabidopsis BRX genes share high levels of similarity among each others, with several conserved domains. The most distinct is BRX domain - highly conserved in all BRX genes among distantly related species. This protein-protein interaction domain is required and sufficient for BRX activity.C.G.S.X.
0.014e-138At4g38890830044dihydrouridine synthase family proteinF:tRNA dihydrouridine synthase activity, FAD binding, catalytic activity;P:oxidation reduction, tRNA processing, metabolic process;C:vacuole;BOMFPAC.G.S.X.
0.024e-138At3g23270821906regulator of chromosome condensation (RCC1) family proteinF:chromatin binding, phosphoinositide binding, Ran GTPase binding;P:signal transduction;C:cellular_component unknown;MOPBFAVC.G.S.X.
0.012e+036At4g182053770304-F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;POFBC.G.S.X.
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Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.223e-58228Glycine maxGmaAffx.61363.1.S1_atCA953193--3e-32At5g12350Ran GTPase binding / chromatin binding / zinc ion bindingC.G.S.X.
0.051e-21105Hordeum vulgareContig11508_s_atContig11508--6e-22At5g19420Ran GTPase binding / chromatin binding / zinc ion bindingC.G.S.X.
0.313e-34149Oryza sativaOs01g0952300AU166551-Regulator of chromosome condensation, RCC1 repeatcontaining protein2e-34At5g19420Ran GTPase binding / chromatin binding / zinc ion bindingC.G.S.X.
0.346e-41171Populus trichocarpaPtpAffx.203552.1.S1_atpmrna7053hypothetical protein-4e-41At5g19420Ran GTPase binding / chromatin binding / zinc ion bindingC.G.S.X.
0.071e-450Triticum aestivumTa.25493.1.A1_atCD452993--4e-5At5g19420Ran GTPase binding / chromatin binding / zinc ion bindingC.G.S.X.
0.076e-22105Vitis vinifera1606581_atCF210843--3e-13At5g12350Ran GTPase binding / chromatin binding / zinc ion bindingC.G.S.X.
0.017e-136Zea maysZm.2321.3.A1_atBG841291hypothetical protein LOC100191581-3e-9At3g23050IAA7 (INDOLE-3-ACETIC ACID 7)C.G.S.X.
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Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
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Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
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