CoP: Co-expressed Biological Processes

Gene omics information

Query gene ID At5g19410

Gene name ABC transporter family protein

Organism Arabidopsis thaliana

Co-expressed genes

As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF %ile Gene/Probe ID Repr.ID Gene Name Functional Description S.X. H.G. Other DB
0.71 84.2 At5g19410 832061 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:chloroplast, membrane;BOMFAPV S.X. H.G.
0.88 94.0 At5g13580 831202 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:membrane;BOMAFPV S.X. H.G.
0.88 94.0 At5g41040 834106 transferase family protein F:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBO S.X. H.G.
0.88 94.0 At5g09520 830811 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVA S.X. H.G.
0.85 92.4 At5g09530 830812 hydroxyproline-rich glycoprotein family protein F:unknown;P:biological_process unknown;C:endomembrane system;MBOPFVA S.X. H.G.
0.84 91.9 At2g48140 819426 EDA4 (embryo sac development arrest 4) F:lipid binding;P:megagametogenesis, lipid transport;C:anchored to membrane;PBMOFV S.X. H.G.
0.79 89.1 At2g43390 818940 unknown protein F:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;P S.X. H.G.
0.77 88.0 At2g22510 816784 hydroxyproline-rich glycoprotein family protein F:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMBVFA S.X. H.G.
0.75 86.9 At2g48130 819425 protease inhibitor/seed storage/lipid transfer protein (LTP) family protein F:lipid binding;P:lipid transport;C:anchored to membrane;PBOM S.X. H.G.
0.75 86.9 At4g36610 829813 hydrolase, alpha/beta fold family protein F:hydrolase activity;P:biological_process unknown;C:endomembrane system;BOMPFA S.X. H.G.
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Specifically expressed experiments

As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX %ile GSM ID Assay Name GSE ID Experiment Title
535.0 100.0 GSM226530 LCOLUMELLASB GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
307.5 100.0 GSM184845 Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 1 GSE7639 Expression analysis of root developmental zones after treatment with salt
171.6 100.0 GSM184846 Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 2 GSE7639 Expression analysis of root developmental zones after treatment with salt
138.7 99.9 GSM226554 Slice12JW GSE8934 A high resolution organ expression map reveals novel expression patterns and predicts cellular function
132.4 99.9 GSM184838 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 8 GSE7639 Expression analysis of root developmental zones after treatment with salt
129.5 99.9 GSM143302 Ts_genomic_hyb_1 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
120.8 99.9 GSM184837 Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7 GSE7639 Expression analysis of root developmental zones after treatment with salt
117.2 99.9 GSM143300 Ts_genomic_hyb_3 GSE6203 Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
115.5 99.9 GSM253652 Ler 2 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
114.5 99.9 GSM253650 Ler 3 GSE10039 Low_Mo_Arabidopsis_mapping_MOT1
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Homologous genes

Paralogous genes

Click Gene ID to show a list of homologous genes.

HF Ev BS Gene ID Repr. ID Gene Name Functional description C.G. S.X. Other DB
0.02 4e-3 44 At5g06530 830541 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:plasma membrane;BOMFAPV C.G. S.X.
0.01 4e-3 44 At4g01450 828176 nodulin MtN21 family protein F:unknown;P:unknown;C:endomembrane system, membrane;PBOM C.G. S.X.
0.01 4e-3 44 At2g25680 817109 MOT1 (molybdate transporter 1) Encodes a high-affinity molybdate transporter. Mutant has reduced concentrations of molybdate in roots and shoots, and reduced shoot and root length when growing on Mo-limited medium. C.G. S.X.
0.01 1e-2 42 At2g39350 818520 ABC transporter family protein F:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:plasma membrane;BOMAFPV C.G. S.X.
0.01 1e-2 42 At1g77840 844119 eukaryotic translation initiation factor 5, putative / eIF-5, putative F:binding, translation initiation factor activity;P:translational initiation, regulation of translational initiation;C:nucleus, cytoplasm;MOFPBAV C.G. S.X.
0.01 2e-1 38 At1g31350 840024 F-box family protein F:molecular_function unknown;P:unknown;C:cellular_component unknown;PMBO C.G. S.X.
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Orthologous genes

Click Gene ID to show a list of orthologous genes.

HF Ev BS Species Gene ID Repr. ID Gene Name Functional description Ev AGI code Arabidopsis gene name C.G. S.X. Other DB
0.02 1e+0 36 Glycine max HgAffx.20912.1.A1_at CK350619 - - 6e-2 At1g56420 unknown protein C.G. S.X.
0.03 7e-3 42 Hordeum vulgare Contig18688_at Contig18688 - - 5e+0 At5g09260 VPS20.2 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20.2) C.G. S.X.
0.07 1e-4 50 Oryza sativa Os.50283.2.S1_at - - - 0 C.G. S.X.
0.21 3e-17 91 Populus trichocarpa PtpAffx.204810.1.S1_at pmrna9483 white-brown-complex ABC transporter family - 2e-17 At5g19410 ABC transporter family protein C.G. S.X.
0.02 1e+0 36 Triticum aestivum TaAffx.57674.1.S1_at CA626105 - - 1e+0 At5g40070 - C.G. S.X.
0.03 3e-4 46 Vitis vinifera 1622870_at CB348576 hypothetical protein LOC100245835 - 3e-13 At4g25750 ABC transporter family protein C.G. S.X.
0.02 2e+0 34 Zea mays ZmAffx.1473.1.S1_at 40794996-100 - - 2e-1 At4g31290 ChaC-like family protein C.G. S.X.
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Biological processes

Click GO ID to show a list of genes that are associated with the GO ID.

ECC GO ID Process Name
L GO:0006810 The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
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Metabolic pathways

Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View ID Link to Kappa-View Pathway Name

Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY ID Link to KEGG PATHWAY Pathway Name
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