Gene omics information

Query gene ID At5g19410
Gene name ABC transporter family protein
Organism Arabidopsis thaliana


Co-expressed genes



As this page just shows up to 10 genes to the query, if you wish to have the complete list of co-expressed genes, click Gene/Probe ID.

VF%ileGene/Probe IDRepr.IDGene NameFunctional DescriptionS.X.H.G.Other DB
0.7184.2At5g19410832061ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:transport;C:chloroplast, membrane;BOMFAPVS.X.H.G.
0.8894.0At5g13580831202ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:membrane;BOMAFPVS.X.H.G.
0.8894.0At5g41040834106transferase family proteinF:transferase activity, transferring acyl groups other than amino-acyl groups, transferase activity;P:biological_process unknown;C:cellular_component unknown;PFBOS.X.H.G.
0.8894.0At5g09520830811hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;BMPOFVAS.X.H.G.
0.8592.4At5g09530830812hydroxyproline-rich glycoprotein family proteinF:unknown;P:biological_process unknown;C:endomembrane system;MBOPFVAS.X.H.G.
0.8491.9At2g48140819426EDA4 (embryo sac development arrest 4)F:lipid binding;P:megagametogenesis, lipid transport;C:anchored to membrane;PBMOFVS.X.H.G.
0.7989.1At2g43390818940unknown proteinF:molecular_function unknown;P:biological_process unknown;C:cellular_component unknown;PS.X.H.G.
0.7788.0At2g22510816784hydroxyproline-rich glycoprotein family proteinF:molecular_function unknown;P:biological_process unknown;C:endomembrane system;POMBVFAS.X.H.G.
0.7586.9At2g48130819425protease inhibitor/seed storage/lipid transfer protein (LTP) family proteinF:lipid binding;P:lipid transport;C:anchored to membrane;PBOMS.X.H.G.
0.7586.9At4g36610829813hydrolase, alpha/beta fold family proteinF:hydrolase activity;P:biological_process unknown;C:endomembrane system;BOMPFAS.X.H.G.
Click here to hide the above table.


Specifically expressed experiments



As this page just shows up to 10 assays to the query, if you wish to have the complete list of assays that the query gene/probe was specifically expressed, click here.
Std2 GX%ileGSM IDAssay NameGSE IDExperiment Title
535.0100.0GSM226530LCOLUMELLASBGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
307.5100.0GSM184845Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 1GSE7639Expression analysis of root developmental zones after treatment with salt
171.6100.0GSM184846Arabidopsis, root, longitudinal zone 4, standard conditions, NaCl, replicate 2GSE7639Expression analysis of root developmental zones after treatment with salt
138.799.9GSM226554Slice12JWGSE8934A high resolution organ expression map reveals novel expression patterns and predicts cellular function
132.499.9GSM184838Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 8GSE7639Expression analysis of root developmental zones after treatment with salt
129.599.9GSM143302Ts_genomic_hyb_1GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
120.899.9GSM184837Arabidopsis, root, longitudinal zone 4, standard conditions, replicate 7GSE7639Expression analysis of root developmental zones after treatment with salt
117.299.9GSM143300Ts_genomic_hyb_3GSE6203Rus_etal_High_Na_Arabidopsis_accessions_mapping_HKT1
115.599.9GSM253652Ler 2GSE10039Low_Mo_Arabidopsis_mapping_MOT1
114.599.9GSM253650Ler 3GSE10039Low_Mo_Arabidopsis_mapping_MOT1
Click here to hide the above table.


Homologous genes



Paralogous genes



Click Gene ID to show a list of homologous genes.

HFEvBSGene IDRepr. IDGene NameFunctional descriptionC.G.S.X.Other DB
0.024e-344At5g06530830541ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:unknown;C:plasma membrane;BOMFAPVC.G.S.X.
0.014e-344At4g01450828176nodulin MtN21 family proteinF:unknown;P:unknown;C:endomembrane system, membrane;PBOMC.G.S.X.
0.014e-344At2g25680817109MOT1 (molybdate transporter 1)Encodes a high-affinity molybdate transporter. Mutant has reduced concentrations of molybdate in roots and shoots, and reduced shoot and root length when growing on Mo-limited medium.C.G.S.X.
0.011e-242At2g39350818520ABC transporter family proteinF:ATPase activity, coupled to transmembrane movement of substances;P:response to nematode;C:plasma membrane;BOMAFPVC.G.S.X.
0.011e-242At1g77840844119eukaryotic translation initiation factor 5, putative / eIF-5, putativeF:binding, translation initiation factor activity;P:translational initiation, regulation of translational initiation;C:nucleus, cytoplasm;MOFPBAVC.G.S.X.
0.012e-138At1g31350840024F-box family proteinF:molecular_function unknown;P:unknown;C:cellular_component unknown;PMBOC.G.S.X.
Click here to hide the above table.



Orthologous genes



Click Gene ID to show a list of orthologous genes.

HFEvBSSpeciesGene IDRepr. IDGene NameFunctional descriptionEvAGI codeArabidopsis gene nameC.G.S.X.Other DB
0.021e+036Glycine maxHgAffx.20912.1.A1_atCK350619--6e-2At1g56420unknown proteinC.G.S.X.
0.037e-342Hordeum vulgareContig18688_atContig18688--5e+0At5g09260VPS20.2 (VACUOLAR PROTEIN SORTING-ASSOCIATED PROTEIN 20.2)C.G.S.X.
0.071e-450Oryza sativaOs.50283.2.S1_at---0C.G.S.X.
0.213e-1791Populus trichocarpaPtpAffx.204810.1.S1_atpmrna9483white-brown-complex ABC transporter family-2e-17At5g19410ABC transporter family proteinC.G.S.X.
0.021e+036Triticum aestivumTaAffx.57674.1.S1_atCA626105--1e+0At5g40070-C.G.S.X.
0.033e-446Vitis vinifera1622870_atCB348576hypothetical protein LOC100245835-3e-13At4g25750ABC transporter family proteinC.G.S.X.
0.022e+034Zea maysZmAffx.1473.1.S1_at40794996-100--2e-1At4g31290ChaC-like family proteinC.G.S.X.
Click here to hide the above table.


Biological processes



Click GO ID to show a list of genes that are associated with the GO ID.

ECCGO IDProcess Name
LGO:0006810The directed movement of substances (such as macromolecules, small molecules, ions) into, out of, within or between cells, or within a multicellular organism.
Click here to hide the above table.


Metabolic pathways



Click KaPPA-View ID to show a list of genes that are assigned to the KaPPA-View ID.

KaPPA-View IDLink to Kappa-ViewPathway Name



Click KEGG PATHWAY ID to show a list of genes that are assigned to the KEGG PATHWAY ID.

KEGG PATHWAY IDLink to KEGG PATHWAYPathway Name
Click here to hide the above table.



Back to the CoP portal site

Back to the KAGIANA project homepage